myRT

myRT report for GCA_002225665.1_ASM222566v1

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Seq: NLFV01000116.1 Escherichia coli strain MOD1-EC5746 MOD1-EC5746_116_length_1922_cov_60.7306, whole genome shotgun sequence (1920 bp)
Overview 1 RT 1: 1-1562 bp Neighborhood of RT #1 [1, 1562] RVT_N RVT-GII Feature: gene Location: 1-1089 bp Feature: domain Description: RVT_N Location: 55-298 bp Feature: domain Description: RVT_N Location: 55-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-979 bp Feature: gene Location: 1126-1254 bp Feature: gene Location: 1305-1562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NLFV01000016.1 Escherichia coli strain MOD1-EC5746 MOD1-EC5746_16_length_102294_cov_131.644, whole genome shotgun sequence (102294 bp)
Overview 1 RT 1: 49289-53171 bp Neighborhood of RT #1 [49289, 53176] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49289-49747 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: domain Description: dut Location: 492 95-49742 bp Feature: gene Location: 49854-50450 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: gene Location: 50496-51455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: gene Location: 51753-52409 bp Feature: domain Description: pyrE Location: 51771-52404 bp Feature: domain Description: pyrE Location: 51771-52 404 bp Feature: gene Location: 52460-53176 bp Feature: domain Description: rph Location: 52463-53171 bp Feature: domain Description: rph Location: 52 463-53171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NLFV01000018.1 Escherichia coli strain MOD1-EC5746 MOD1-EC5746_18_length_97844_cov_114.871, whole genome shotgun sequence (97844 bp)
Overview 1 RT 1: 23559-27302 bp Neighborhood of RT #1 [23559, 27313] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23559-24041 bp Feature: domain Description: SmpB Location: 23589-24036 bp Feature: domain Description: SmpB Location: 23 589-2403 6 bp Feature: gene Location: 24175-24342 bp Feature: gene Location: 24727-25500 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24862-25315 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24862-253 15 bp Feature: gene Location: 25904-26122 bp Feature: domain Description: PRK09678 Location: 25907-26105 bp Feature: domain Description: PRK09678 Location: 25907-26105 bp Feature: gene Location: 26213-27313 bp Feature: domain Description: D Location: 26219-27302 bp Feature: domain Description: D Location: 26219-273 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NLFV01000070.1 Escherichia coli strain MOD1-EC5746 MOD1-EC5746_70_length_6189_cov_56.3272, whole genome shotgun sequence (6189 bp)
Overview 1 RT 1: 3846-5831 bp Neighborhood of RT #1 [3846, 6076] PHA02517 RVT-GII GIIM Feature: gene Location: 3846-4109 bp Feature: gene Location: 4167-4613 bp Feature: domain Description: PHA02517 Location: 4170-4611 bp Feature: domain Description: PHA02517 Location: 4 170-4 611 bp Feature: gene Location: 4730-6076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4826-5558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 826-5558 bp Feature: domain Description: GIIM Note: maturase Location: 5633-5831 bp Feature: domain Description: GIIM Note: maturase Location: 5633-5831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NLFV01000089.1 Escherichia coli strain MOD1-EC5746 MOD1-EC5746_89_length_3234_cov_75.7289, whole genome shotgun sequence (3234 bp)
Overview 1 RT 1: 1045-3154 bp Neighborhood of RT #1 [1045, 3154] InsE RVT_N RVT-GII Feature: gene Location: 1045-1464 bp Feature: domain Description: InsE Location: 1060-1444 bp Feature: domain Description: InsE Location: 1060-1444 bp Feature: gene Location: 1319-1735 bp Feature: gene Location: 1797-2720 bp Feature: domain Description: RVT_N Location: 1845-2088 bp Feature: domain Description: RVT_N Location: 1845 -2088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2133-2703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2133-2703 bp Feature: gene Location: 2747-3154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII