myRT

myRT report for GCA_002226155.1_ASM222615v1

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Seq: NLGV01000115.1 Escherichia coli strain MOD1-EC5718 MOD1-EC5718_115_length_1193_cov_4.00627, whole genome shotgun sequence (1193 bp)
Overview 1 RT 1: 1-916 bp Neighborhood of RT #1 [1, 1191] RVT-Retrons Feature: gene Location: 1-243 bp Feature: gene Location: 403-1191 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 409-916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 409-91 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NLGV01000030.1 Escherichia coli strain MOD1-EC5718 MOD1-EC5718_30_length_60325_cov_65.6528, whole genome shotgun sequence (60325 bp)
Overview 1 RT 1: 51742-57289 bp Neighborhood of RT #1 [51742, 57289] DUF1706 RVT-GII GIIM conj_TOL_TraD Feature: gene Location: 51742-52254 bp Feature: domain Description: DUF1706 Location: 51745-52240 bp Feature: domain Description: DUF1706 Location: 51745-52 2 40 bp Feature: gene Location: 52447-52635 bp Feature: gene Location: 53336-54505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53945-54128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53945-5412 8 bp Feature: domain Description: GIIM Note: maturase Location: 54206-54428 bp Feature: domain Description: GIIM Note: maturase Location: 542 06-5442 8 bp Feature: gene Location: 54498-56594 bp Feature: domain Description: conj_TOL_TraD Location: 54519-56454 bp Feature: domain Description: conj_TOL_TraD Location: 54519-56454 bp Feature: gene Location: 56591-57289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1706 (pfam08020), RVT-GII, GIIM (pfam08388), conj_TOL_TraD (TIGR03754)

Seq: NLGV01000041.1 Escherichia coli strain MOD1-EC5718 MOD1-EC5718_41_length_36506_cov_40.475, whole genome shotgun sequence (36506 bp)
Overview 1 RT 1: 3581-8285 bp Neighborhood of RT #1 [3581, 8368] CdiI_3 RVT-GII RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 3581-3967 bp Feature: domain Description: CdiI_3 Location: 3605-3881 bp Feature: domain Description: CdiI_3 Location: 3 605-3 881 bp Feature: gene Location: 4166-4306 bp Feature: gene Location: 4414-4896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4735-4822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473 5-4822 bp Feature: gene Location: 4935-5705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4938-5352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493 8-53 52 bp Feature: domain Description: GIIM Note: maturase Location: 5403-5568 bp Feature: domain Description: GIIM Note: maturase Location: 5403 -5568 bp Feature: gene Location: 6368-7855 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6431-6653 bp Feature: domain Description: LZ_Tnp_IS66 Location: 643 1-6653 bp Feature: domain Description: zf-IS66 Location: 6677-6803 bp Feature: domain Description: zf-IS66 Location: 6677-6803 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6851-7700 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6851-7700 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7721-7829 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7721-7829 bp Feature: gene Location: 7976-8368 bp Feature: domain Description: TnpB_IS66 Location: 7994-8285 bp Feature: domain Description: TnpB_IS66 Location: 7994-8285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)