myRT

myRT report for GCA_002226505.1_ASM222650v1

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Seq: NLHL01000012.1 Escherichia coli strain MOD1-EC5700 MOD1-EC5700_12_length_141798_cov_65.5238, whole genome shotgun sequence (141798 bp)
Overview 1 RT 1: 33683-37843 bp Neighborhood of RT #1 [33683, 37843] TIGR02646 COG3950 RVT-Retrons DinI Feature: gene Location: 33683-34243 bp Feature: domain Description: TIGR02646 Location: 33686-34034 bp Feature: domain Description: TIGR02646 Location: 33686-34034 bp Feature: gene Location: 34363-35997 bp Feature: domain Description: COG3950 Location: 34501-35959 bp Feature: domain Description: COG3950 Location: 34501 -35959 bp Feature: gene Location: 35997-36932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36099-36693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36099-36693 bp Feature: gene Location: 37411-37644 bp Feature: domain Description: DinI Location: 37453-37639 bp Feature: domain Description: DinI Location: 37453-37639 bp Feature: gene Location: 37655-37843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DinI (pfam06183)

Seq: NLHL01000023.1 Escherichia coli strain MOD1-EC5700 MOD1-EC5700_23_length_76712_cov_58.1212, whole genome shotgun sequence (76712 bp)
Overview 1 RT 1: 10336-15803 bp Neighborhood of RT #1 [10336, 15808] Phage_int_SAM_2 Integrase_1 RVT-UG12 cbl PRK11233 Feature: gene Location: 10336-11247 bp Feature: domain Description: Phage_int_SAM_2 Location: 10339-10609 bp Feature: domain Description: Phage_int_SAM_2 Location: 10339-10609 bp Feature: domain Description: Integrase_1 Location: 10642-11086 bp Feature: domain Description: Integrase_1 Location: 10642 -11086 bp Feature: gene Location: 11556-11819 bp Feature: gene Location: 11816-13111 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12167-12602 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12 167-12 602 bp Feature: gene Location: 13839-14789 bp Feature: domain Description: cbl Location: 13842-14787 bp Feature: domain Description: cbl Location: 13842 -14787 bp Feature: gene Location: 14891-15808 bp Feature: domain Description: PRK11233 Location: 14894-15803 bp Feature: domain Description: PRK112 33 Location: 14894-15803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), RVT-UG12, cbl (PRK12679), PRK11233 (nitrogen assimilation transcriptional regulator; Provisional)

Seq: NLHL01000025.1 Escherichia coli strain MOD1-EC5700 MOD1-EC5700_25_length_53281_cov_64.6323, whole genome shotgun sequence (53280 bp)
Overview 1 RT 1: 39520-46082 bp Neighborhood of RT #1 [39520, 46090] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 39520-39795 bp Feature: domain Description: DUF5405 Location: 39538-39778 bp Feature: domain Description: DUF5405 Location: 3 953 8-3 9778 bp Feature: gene Location: 39743-42055 bp Feature: domain Description: Phage_GPA Location: 40184-41171 bp Feature: domain Description: Phage_GPA Location: 40184-41171 bp Feature: gene Location: 42382-43371 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42499-43060 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42499-43 060 bp Feature: gene Location: 43373-44725 bp Feature: domain Description: ABC_ATPase Location: 43433-44156 bp Feature: domain Description: ABC_ATPase Location: 43 43 3 -44156 bp Feature: gene Location: 45056-46090 bp Feature: domain Description: Q Location: 45059-46082 bp Feature: domain Description: Q Location: 45059-46082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)