myRT

myRT report for GCA_002226545.1_ASM222654v1

Download annotations/find similar RTs

Seq: NLIG01000010.1 Escherichia coli strain MOD1-EC5679 MOD1-EC5679_10_length_149279_cov_55.4916, whole genome shotgun sequence (149279 bp)
Overview 1 RT 1: 96010-99892 bp Neighborhood of RT #1 [96010, 99897] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 96010-96726 bp Feature: domain Description: rph Location: 96013-96721 bp Feature: domain Description: rph Location: 9601 3-96721 bp Feature: gene Location: 96777-97433 bp Feature: domain Description: pyrE Location: 96795-97428 bp Feature: domain Description: pyrE Location: 96795-97428 bp Feature: gene Location: 97731-98690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97866-98415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97866-9841 5 bp Feature: gene Location: 98736-99332 bp Feature: domain Description: slmA Location: 98742-99318 bp Feature: domain Description: slmA Location: 98742-9931 8 bp Feature: gene Location: 99439-99897 bp Feature: domain Description: dut Location: 99445-99892 bp Feature: domain Description: dut Location: 99445-99892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NLIG01000026.1 Escherichia coli strain MOD1-EC5679 MOD1-EC5679_26_length_44627_cov_45.7734, whole genome shotgun sequence (44627 bp)
Overview 1 RT 1: 2521-8764 bp Neighborhood of RT #1 [2521, 8787] HTH_19 COG3617 RVT-Retrons PBP2_CrgA_like_5 XdhC Feature: gene Location: 2521-2871 bp Feature: domain Description: HTH_19 Location: 2539-2722 bp Feature: domain Description: HTH_19 Location: 2 539-2 72 2 bp Feature: gene Location: 3205-3966 bp Feature: domain Description: COG3617 Location: 3259-3646 bp Feature: domain Description: COG3617 Location: 32 59-3646 bp Feature: gene Location: 5247-6470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5400-6015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5400-6015 bp Feature: gene Location: 7442-7852 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 7514-7826 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 7514-782 6 bp Feature: gene Location: 7831-8787 bp Feature: domain Description: XdhC Location: 7909-8764 bp Feature: domain Description: XdhC Location: 7909-8764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_19 (pfam12844), COG3617 (Prophage antirepressor ), RVT-Retrons, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)

Seq: NLIG01000006.1 Escherichia coli strain MOD1-EC5679 MOD1-EC5679_6_length_295427_cov_54.0989, whole genome shotgun sequence (295427 bp)
Overview 1 RT 1: 292606-295198 bp Neighborhood of RT #1 [292606, 295425] SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 292606-292746 bp Feature: gene Location: 292759-293310 bp Feature: domain Description: SLATT_5 Location: 292765-293281 bp Feature: domain Description: SLATT_5 Location: 292765-293 281 bp Feature: gene Location: 293288-294658 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 293516-294122 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 293 516-294122 bp Feature: gene Location: 294739-295071 bp Feature: gene Location: 295096-295425 bp Feature: domain Description: Peptidase_S74 Location: 295102-295198 bp Feature: domain Description: Peptidase_S74 Location: 295102-295198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)