myRT

myRT report for GCA_002226815.1_ASM222681v1

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Seq: NLHX01000051.1 Escherichia coli strain MOD1-EC5688 MOD1-EC5688_51_length_16398_cov_52.1501, whole genome shotgun sequence (16398 bp)
Overview 1 RT 1: 1578-9072 bp Neighborhood of RT #1 [1578, 9074] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C ESPR O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT autotrans_barl Feature: gene Location: 1578-3017 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1716-1941 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 71 6-1 941 bp Feature: domain Description: zf-IS66 Location: 1962-2094 bp Feature: domain Description: zf-IS66 Location: 1 962-2094 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2139-2976 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 39-2976 bp Feature: gene Location: 3225-3386 bp Feature: gene Location: 3479-4711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680-4334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680-4334 bp Feature: domain Description: GIIM Note: maturase Location: 4412-4634 bp Feature: domain Description: GIIM Note: maturase Location: 441 2-4634 bp Feature: gene Location: 4827-4973 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4839-4950 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4839-4950 bp Feature: gene Location: 5151-9074 bp Feature: domain Description: ESPR Location: 5154-5223 bp Feature: domain Description: ESPR Location: 51 54-5223 bp Feature: domain Description: O_hepto_targRPT Location: 5319-5430 bp Feature: domain Description: O_hepto_targRPT Location: 531 9-5430 bp Feature: domain Description: O_hepto_targRPT Location: 5436-5544 bp Feature: domain Description: O_hepto_targRPT Location: 5436-5544 bp Feature: domain Description: O_hepto_targRPT Location: 5547-5655 bp Feature: domain Description: O_hepto_targRPT Location: 5547-5655 bp Feature: domain Description: O_hepto_targRPT Location: 5667-5769 bp Feature: domain Description: O_hepto_targRPT Location: 5667-5769 bp Feature: domain Description: O_hepto_targRPT Location: 5772-5880 bp Feature: domain Description: O_hepto_targRPT Location: 5772-5880 bp Feature: domain Description: O_hepto_targRPT Location: 5886-5994 bp Feature: domain Description: O_hepto_targRPT Location: 5886-5994 bp Feature: domain Description: O_hepto_targRPT Location: 6000-6108 bp Feature: domain Description: O_hepto_targRPT Location: 6000-61 08 bp Feature: domain Description: O_hepto_targRPT Location: 6117-6222 bp Feature: domain Description: O_hepto_targRPT Location: 61 1 7-6222 bp Feature: domain Description: O_hepto_targRPT Location: 6225-6333 bp Feature: domain Description: O_hepto_targRPT Location: 6225-6333 bp Feature: domain Description: O_hepto_targRPT Location: 6336-6447 bp Feature: domain Description: O_hepto_targRPT Location: 6336-6447 bp Feature: domain Description: O_hepto_targRPT Location: 6450-6561 bp Feature: domain Description: O_hepto_targRPT Location: 6450-6561 bp Feature: domain Description: O_hepto_targRPT Location: 6564-6672 bp Feature: domain Description: O_hepto_targRPT Location: 6564-6672 bp Feature: domain Description: O_hepto_targRPT Location: 6675-6780 bp Feature: domain Description: O_hepto_targRPT Location: 6675-6780 bp Feature: domain Description: O_hepto_targRPT Location: 6786-6894 bp Feature: domain Description: O_hepto_targRPT Location: 6786-6894 bp Feature: domain Description: O_hepto_targRPT Location: 6897-7008 bp Feature: domain Description: O_hepto_targRPT Location: 6897-7008 bp Feature: domain Description: O_hepto_targRPT Location: 7014-7119 bp Feature: domain Description: O_hepto_targRPT Location: 701 4-71 1 9 bp Feature: domain Description: O_hepto_targRPT Location: 7176-7284 bp Feature: domain Description: O_hepto_targRPT Location: 71 76-7284 bp Feature: domain Description: autotrans_barl Location: 7749-9072 bp Feature: domain Description: autotrans_barl Location: 7749-9072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ESPR (pfam13018), O_hepto_targRPT (TIGR04415), autotrans_barl (TIGR01414)