myRT

myRT report for GCA_002227315.1_ASM222731v1

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Seq: NLJU01000056.1 Escherichia coli strain MOD1-EC5637 MOD1-EC5637_56_length_24468_cov_42.5331, whole genome shotgun sequence (24468 bp)
Overview 1 RT 1: 8476-12836 bp Neighborhood of RT #1 [8476, 12838] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 8476-9576 bp Feature: domain Description: D Location: 8482-9565 bp Feature: domain Description: D Location: 8482-9565 bp Feature: gene Location: 9667-9885 bp Feature: domain Description: PRK09678 Location: 9670-9868 bp Feature: domain Description: PRK09678 Location: 9670-9868 bp Feature: gene Location: 10289-11062 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 10424-10877 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 0424-1 0877 bp Feature: gene Location: 11748-12230 bp Feature: domain Description: SmpB Location: 11778-12225 bp Feature: domain Description: SmpB Location: 1 1 778-1 2225 bp Feature: gene Location: 12362-12838 bp Feature: domain Description: PRK10724 Location: 12368-12836 bp Feature: domain Description: PRK1 0724 Location: 1 2368-1 2836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NLJU01000062.1 Escherichia coli strain MOD1-EC5637 MOD1-EC5637_62_length_20222_cov_31.6056, whole genome shotgun sequence (20220 bp)
Overview 1 RT 1: 108-6619 bp Neighborhood of RT #1 [108, 6744] HTH_36 AAA_21 RVT-Retrons INT_Rci_Hp1_C INT_Rci_Hp1_C Feature: gene Location: 108-641 bp Feature: domain Description: HTH_36 Location: 294-450 bp Feature: domain Description: HTH_36 Location: 2 94-450 bp Feature: gene Location: 1101-3218 bp Feature: domain Description: AAA_21 Location: 1176-2085 bp Feature: domain Description: AAA_2 1 Location: 1176-2 085 bp Feature: gene Location: 3385-4488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3535-4084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3535-4084 bp Feature: gene Location: 4697-5275 bp Feature: gene Location: 5287-6744 bp Feature: domain Description: INT_Rci_Hp1_C Location: 5665-5863 bp Feature: domain Description: INT_Rci_Hp1_C Location: 5665-5863 bp Feature: domain Description: INT_Rci_Hp1_C Location: 6148-6619 bp Feature: domain Description: INT_Rci_Hp1_C Location: 6148-6619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), AAA_21 (pfam13304), RVT-Retrons, INT_Rci_Hp1_C (cd00796)