myRT

myRT report for GCA_002227365.1_ASM222736v1

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Seq: NLIZ01000030.1 Escherichia coli strain MOD1-EC5660 MOD1-EC5660_30_length_56892_cov_50.0546, whole genome shotgun sequence (56892 bp)
Overview 1 RT 1: 45247-50277 bp Neighborhood of RT #1 [45247, 51176] prfC PRK10597 RVT-Retrons TIR_2 PRK09786 Phage_fiber_2 Feature: gene Location: 45247-46833 bp Feature: domain Description: prfC Location: 45265-46831 bp Feature: domain Description: prfC Location: 45265-46831 bp Feature: gene Location: 47053-47313 bp Feature: domain Description: PRK10597 Location: 47056-47296 bp Feature: domain Description: PRK1 0597 Location: 47056-47296 bp Feature: gene Location: 47671-48462 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47962-48424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47962-48424 bp Feature: gene Location: 48623-49276 bp Feature: domain Description: TIR_2 Location: 48881-49172 bp Feature: domain Description: TIR_2 Location: 48881 -491 72 bp Feature: gene Location: 49926-51176 bp Feature: domain Description: PRK09786 Location: 49932-50133 bp Feature: domain Description: PRK09786 Location: 49932-501 33 bp Feature: domain Description: Phage_fiber_2 Location: 50166-50277 bp Feature: domain Description: Phage_fiber_2 Location: 501 66-50277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), PRK09786 (endodeoxyribonuclease RUS; Reviewed), Phage_fiber_2 (pfam03406)

Seq: NLIZ01000043.1 Escherichia coli strain MOD1-EC5660 MOD1-EC5660_43_length_37410_cov_39.5988, whole genome shotgun sequence (37410 bp)
Overview 1 RT 1: 13649-20818 bp Neighborhood of RT #1 [13649, 20818] ESPR O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT AIDA O_hepto_targRPT autotrans_barl hepto_Aah_TibC RVT-GII RAYT Feature: gene Location: 13649-17512 bp Feature: domain Description: ESPR Location: 13652-13721 bp Feature: domain Description: ESPR Location: 13652 -1372 1 bp Feature: domain Description: O_hepto_targRPT Location: 13820-13928 bp Feature: domain Description: O_hepto_targRPT Location: 1382 0-1392 8 bp Feature: domain Description: O_hepto_targRPT Location: 13934-14042 bp Feature: domain Description: O_hepto_targRPT Location: 13934-14042 bp Feature: domain Description: O_hepto_targRPT Location: 14045-14153 bp Feature: domain Description: O_hepto_targRPT Location: 14045-14153 bp Feature: domain Description: O_hepto_targRPT Location: 14159-14267 bp Feature: domain Description: O_hepto_targRPT Location: 14159-142 67 bp Feature: domain Description: O_hepto_targRPT Location: 14270-14381 bp Feature: domain Description: O_hepto_targRPT Location: 142 70-14381 bp Feature: domain Description: O_hepto_targRPT Location: 14384-14492 bp Feature: domain Description: O_hepto_targRPT Location: 14384-14492 bp Feature: domain Description: O_hepto_targRPT Location: 14495-14606 bp Feature: domain Description: O_hepto_targRPT Location: 14495-14606 bp Feature: domain Description: O_hepto_targRPT Location: 14660-14771 bp Feature: domain Description: O_hepto_targRPT Location: 14660-14771 bp Feature: domain Description: O_hepto_targRPT Location: 14777-14885 bp Feature: domain Description: O_hepto_targRPT Location: 14777-14885 bp Feature: domain Description: O_hepto_targRPT Location: 14891-14999 bp Feature: domain Description: O_hepto_targRPT Location: 14891-14999 bp Feature: domain Description: O_hepto_targRPT Location: 15002-15110 bp Feature: domain Description: O_hepto_targRPT Location: 15002 -15110 bp Feature: domain Description: O_hepto_targRPT Location: 15116-15218 bp Feature: domain Description: O_hepto_targRPT Location: 15116-152 18 bp Feature: domain Description: O_hepto_targRPT Location: 15227-15332 bp Feature: domain Description: O_hepto_targRPT Location: 152 2 7-15332 bp Feature: domain Description: O_hepto_targRPT Location: 15338-15446 bp Feature: domain Description: O_hepto_targRPT Location: 15338-15446 bp Feature: domain Description: AIDA Location: 15470-15578 bp Feature: domain Description: AIDA Location: 15470-15578 bp Feature: domain Description: O_hepto_targRPT Location: 15614-15722 bp Feature: domain Description: O_hepto_targRPT Location: 15614-1572 2 bp Feature: domain Description: autotrans_barl Location: 16187-17510 bp Feature: domain Description: autotrans_barl Location: 16187-17510 bp Feature: gene Location: 17512-18687 bp Feature: domain Description: hepto_Aah_TibC Location: 17536-18649 bp Feature: domain Description: hepto_Aah_TibC Location: 17536-18649 bp Feature: gene Location: 19056-19901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19110-19716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19110-19716 bp Feature: gene Location: 20123-20608 bp Feature: domain Description: RAYT Location: 20270-20585 bp Feature: domain Description: RAYT Location: 2 02 70-2 0585 bp Feature: gene Location: 20660-20818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), O_hepto_targRPT (TIGR04415), AIDA (pfam16168), autotrans_barl (TIGR01414), hepto_Aah_TibC (TIGR04414), RVT-GII, RAYT (COG1943)