myRT

myRT report for GCA_002227735.1_ASM222773v1

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Seq: NLKD01000138.1 Escherichia coli strain MOD1-EC5628 MOD1-EC5628_138_length_2670_cov_30.1663, whole genome shotgun sequence (2670 bp)
Overview 1 RT 1: 300-2550 bp Neighborhood of RT #1 [300, 2570] PRK09692 RVT-UG7 Feature: gene Location: 300-452 bp Feature: gene Location: 728-1912 bp Feature: domain Description: PRK09692 Location: 734-1889 bp Feature: domain Description: PRK09692 Location: 734-1 889 bp Feature: gene Location: 1905-2570 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2313-2550 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 231 3-2550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7

Seq: NLKD01000042.1 Escherichia coli strain MOD1-EC5628 MOD1-EC5628_42_length_41189_cov_25.8078, whole genome shotgun sequence (41189 bp)
Overview 1 RT 1: 1796-5162 bp Neighborhood of RT #1 [1796, 5182] DcuC RVT-GII InsE Feature: gene Location: 1796-3157 bp Feature: domain Description: DcuC Location: 1799-3131 bp Feature: domain Description: DcuC Location: 1799-3131 bp Feature: gene Location: 3210-3581 bp Feature: gene Location: 3803-4249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-4211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-42 11 bp Feature: gene Location: 4297-4446 bp Feature: gene Location: 4757-5182 bp Feature: domain Description: InsE Location: 4772-5162 bp Feature: domain Description: InsE Location: 4772 -5162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, InsE (COG2963)

Seq: NLKD01000057.1 Escherichia coli strain MOD1-EC5628 MOD1-EC5628_57_length_27412_cov_36.1567, whole genome shotgun sequence (27412 bp)
Overview 1 RT 1: 3-3029 bp Neighborhood of RT #1 [3, 3094] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-371 bp Feature: domain Description: PHA02517 Location: 6-369 bp Feature: domain Description: PHA02517 Location: 6-3 69 bp Feature: gene Location: 500-2023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1505 bp Feature: domain Description: GIIM Note: maturase Location: 1580-1778 bp Feature: domain Description: GIIM Note: maturase Location: 1580-1778 bp Feature: gene Location: 1977-2402 bp Feature: gene Location: 2615-3094 bp Feature: domain Description: PHA02517 Location: 2675-3029 bp Feature: domain Description: PHA02517 Location: 2675-3 029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NLKD01000067.1 Escherichia coli strain MOD1-EC5628 MOD1-EC5628_67_length_22889_cov_30.6541, whole genome shotgun sequence (22889 bp)
Overview 1 RT 1: 20482-22065 bp Neighborhood of RT #1 [20482, 22856] RVT-UG7 Feature: gene Location: 20482-20841 bp Feature: gene Location: 21040-21780 bp Feature: gene Location: 21777-22856 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21870-22065 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21870-22065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7