myRT

myRT report for GCA_002228095.1_ASM222809v1

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Seq: NLKJ01000130.1 Escherichia coli strain MOD1-EC5590 MOD1-EC5590_130_length_6918_cov_47.7336, whole genome shotgun sequence (6918 bp)
Overview 1 RT 1: 60-1630 bp Neighborhood of RT #1 [60, 1704] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 60-362 bp Feature: domain Description: InsE Location: 63-348 bp Feature: domain Description: InsE Location: 63-348 bp Feature: gene Location: 401-604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-602 bp Feature: gene Location: 638-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641-824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641 -824 bp Feature: gene Location: 867-1079 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 870-1068 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 870-1 068 bp Feature: gene Location: 1222-1704 bp Feature: domain Description: IS285 Location: 1252-1630 bp Feature: domain Description: IS285 Location: 1 252-1 630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: NLKJ01000189.1 Escherichia coli strain MOD1-EC5590 MOD1-EC5590_192_length_2227_cov_164.696, whole genome shotgun sequence (2227 bp)
Overview 1 RT 1: 92-2226 bp Neighborhood of RT #1 [92, 2226] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172 -1370 bp Feature: gene Location: 1909-2226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLKJ01000007.1 Escherichia coli strain MOD1-EC5590 MOD1-EC5590_7_length_142807_cov_32.8144, whole genome shotgun sequence (142807 bp)
Overview 1 RT 1: 135299-141330 bp Neighborhood of RT #1 [135299, 141330] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 135299-136219 bp Feature: domain Description: AbiEii Location: 135341-136082 bp Feature: domain Description: AbiEii Location: 13 53 41-13 6082 bp Feature: gene Location: 136206-137009 bp Feature: domain Description: AbiEi_3_N Location: 136239-136500 bp Feature: domain Description: AbiEi_3 _N Location: 13 623 9-13 6500 bp Feature: domain Description: AbiEi_3 Location: 136512-136968 bp Feature: domain Description: AbiEi_3 Location: 13 6512-13 6968 bp Feature: gene Location: 137304-140513 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 137832-138321 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13 783 2-13 83 21 bp Feature: domain Description: nitrilase Location: 139827-140424 bp Feature: domain Description: nitrilase Location: 13 9827-140424 bp Feature: gene Location: 140674-140814 bp Feature: domain Description: Phage_ASH Location: 140701-140794 bp Feature: domain Description: Phage_ASH Location: 140701-140794 bp Feature: gene Location: 140860-141330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: NLKJ01000093.1 Escherichia coli strain MOD1-EC5590 MOD1-EC5590_93_length_16067_cov_32.4762, whole genome shotgun sequence (16067 bp)
Overview 1 RT 1: 9760-13742 bp Neighborhood of RT #1 [9760, 13768] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 9760-10791 bp Feature: domain Description: Asparaginase_2 Location: 9850-10783 bp Feature: domain Description: Asparaginase_2 Location: 9850-10783 bp Feature: gene Location: 11118-11267 bp Feature: gene Location: 11315-11761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11621-11723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11621-11723 bp Feature: gene Location: 11983-12354 bp Feature: gene Location: 12407-13768 bp Feature: domain Description: DcuC Location: 12410-13742 bp Feature: domain Description: DcuC Location: 124 10-1374 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)