myRT

myRT report for GCA_002228385.1_ASM222838v1

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Seq: NLKV01000109.1 Escherichia coli strain MOD1-EC5578 MOD1-EC5578_109_length_2507_cov_174.79, whole genome shotgun sequence (2507 bp)
Overview 1 RT 1: 191-2441 bp Neighborhood of RT #1 [191, 2506] RVT-GII GIIM PHA02517 Feature: gene Location: 191-1714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1 1 96 bp Feature: domain Description: GIIM Note: maturase Location: 1271-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1 271 -1 469 bp Feature: gene Location: 2306-2506 bp Feature: domain Description: PHA02517 Location: 2309-2441 bp Feature: domain Description: PHA0251 7 Location: 2309-2441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NLKV01000029.1 Escherichia coli strain MOD1-EC5578 MOD1-EC5578_29_length_44520_cov_96.5378, whole genome shotgun sequence (44520 bp)
Overview 1 RT 1: 2-4385 bp Neighborhood of RT #1 [2, 4477] RhsA RVT-GII RVT-GII group_II_RT_mat YhhI YhhI YhhI Feature: gene Location: 2-796 bp Feature: domain Description: RhsA Location: 11-362 bp Feature: domain Description: RhsA Location: 11-362 bp Feature: gene Location: 1161-1388 bp Feature: gene Location: 1639-2382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2110-2380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 110-2 380 bp Feature: gene Location: 2437-2718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2443-2704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 443-2 704 bp Feature: gene Location: 2740-2991 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2746-2974 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 746-2 974 bp Feature: gene Location: 3341-4477 bp Feature: domain Description: YhhI Location: 3344-3707 bp Feature: domain Description: YhhI Location: 3344-3707 bp Feature: domain Description: YhhI Location: 3764-4118 bp Feature: domain Description: YhhI Location: 3764-4118 bp Feature: domain Description: YhhI Location: 4136-4385 bp Feature: domain Description: YhhI Location: 4136-4385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), RhsA (COG3209), YhhI (COG5433)

Seq: NLKV01000052.1 Escherichia coli strain MOD1-EC5578 MOD1-EC5578_52_length_17821_cov_99.2721, whole genome shotgun sequence (17820 bp)
Overview 1 RT 1: 2214-6214 bp Neighborhood of RT #1 [2214, 6222] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2214-3575 bp Feature: domain Description: DcuC Location: 2217-3549 bp Feature: domain Description: DcuC Location: 2217-3 549 bp Feature: gene Location: 3628-3999 bp Feature: gene Location: 4221-4667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4527-4629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4527-4629 bp Feature: gene Location: 4715-4864 bp Feature: gene Location: 5191-6222 bp Feature: domain Description: Asparaginase_2 Location: 5281-6214 bp Feature: domain Description: Asparaginase_2 Location: 5281-6214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)