myRT

myRT report for GCA_002228775.1_ASM222877v1

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Seq: NLNP01000030.1 Escherichia coli strain MOD1-EC5501 MOD1-EC5501_30_length_51618_cov_50.9407, whole genome shotgun sequence (51618 bp)
Overview 1 RT 1: 30384-34410 bp Neighborhood of RT #1 [30384, 34410] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 30384-30548 bp Feature: gene Location: 31151-32653 bp Feature: domain Description: PRK13889 Location: 31154-31733 bp Feature: domain Description: PRK1 3889 Location: 31 1 54-31 733 bp Feature: gene Location: 32730-33830 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32871-33423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32871 -33423 bp Feature: gene Location: 33823-34104 bp Feature: domain Description: HTH_XRE Location: 33838-34003 bp Feature: domain Description: HTH_XRE Location: 33838-34003 bp Feature: gene Location: 34195-34410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: NLNP01000045.1 Escherichia coli strain MOD1-EC5501 MOD1-EC5501_45_length_25536_cov_64.0068, whole genome shotgun sequence (25536 bp)
Overview 1 RT 1: 17161-20538 bp Neighborhood of RT #1 [17161, 20543] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 17161-17358 bp Feature: domain Description: PRK09413 Location: 17164-17326 bp Feature: domain Description: PRK09413 Location: 17164-1732 6 bp Feature: gene Location: 17413-17763 bp Feature: gene Location: 17834-19186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18155-18773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18155-18773 bp Feature: domain Description: GIIM Note: maturase Location: 18821-19052 bp Feature: domain Description: GIIM Note: maturase Location: 1882 1-19052 bp Feature: gene Location: 19395-19796 bp Feature: gene Location: 19896-20543 bp Feature: domain Description: PinE Location: 19989-20538 bp Feature: domain Description: PinE Location: 19989-2 0538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: NLNP01000086.1 Escherichia coli strain MOD1-EC5501 MOD1-EC5501_86_length_2272_cov_337.384, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)