myRT

myRT report for GCA_002229335.1_ASM222933v1

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Seq: NLMN01000119.1 Escherichia coli strain MOD1-EC5530 MOD1-EC5530_119_length_2275_cov_501.171, whole genome shotgun sequence (2275 bp)
Overview 1 RT 1: 96-2272 bp Neighborhood of RT #1 [96, 2272] RVT-GII GIIM Feature: gene Location: 96-1619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1 1 01 bp Feature: domain Description: GIIM Note: maturase Location: 1176-1374 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 76-1 374 bp Feature: gene Location: 1913-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLMN01000064.1 Escherichia coli strain MOD1-EC5530 MOD1-EC5530_64_length_18422_cov_41.9558, whole genome shotgun sequence (18420 bp)
Overview 1 RT 1: 3756-7638 bp Neighborhood of RT #1 [3756, 7643] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 3756-4472 bp Feature: domain Description: rph Location: 3759-4467 bp Feature: domain Description: rph Location: 3759-4467 bp Feature: gene Location: 4523-5179 bp Feature: domain Description: pyrE Location: 4541-5174 bp Feature: domain Description: pyrE Location: 4541-5174 bp Feature: gene Location: 5477-6436 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5612-6161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5612 -6161 bp Feature: gene Location: 6482-7078 bp Feature: domain Description: slmA Location: 6488-7064 bp Feature: domain Description: slmA Location: 6488-7064 bp Feature: gene Location: 7185-7643 bp Feature: domain Description: dut Location: 7191-7638 bp Feature: domain Description: dut Location: 7191-7638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NLMN01000069.1 Escherichia coli strain MOD1-EC5530 MOD1-EC5530_69_length_16110_cov_42.1042, whole genome shotgun sequence (16110 bp)
Overview 1 RT 1: 9803-13785 bp Neighborhood of RT #1 [9803, 13811] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 9803-10834 bp Feature: domain Description: Asparaginase_2 Location: 9893-10826 bp Feature: domain Description: Asparaginase_2 Location: 9893 -10826 bp Feature: gene Location: 11161-11310 bp Feature: gene Location: 11358-11804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11664-11766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11664-11766 bp Feature: gene Location: 12026-12397 bp Feature: gene Location: 12450-13811 bp Feature: domain Description: DcuC Location: 12453-13785 bp Feature: domain Description: DcuC Location: 12453 -13 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DcuC (TIGR00771), Asparaginase_2 (pfam01112)