myRT

myRT report for GCA_002229375.1_ASM222937v1

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Seq: NLNQ01000141.1 Escherichia coli strain MOD1-EC5500 MOD1-EC5500_141_length_1477_cov_388.233, whole genome shotgun sequence (1477 bp)
Overview 1 RT 1: 93-1230 bp Neighborhood of RT #1 [93, 1475] RVT-GII GIIM Feature: gene Location: 93-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: domain Description: GIIM Note: maturase Location: 1032-1230 bp Feature: domain Description: GIIM Note: maturase Location: 1 032-1 230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLNQ01000179.1 Escherichia coli strain MOD1-EC5500 MOD1-EC5500_179_length_735_cov_94.0412, whole genome shotgun sequence (735 bp)
Overview 1 RT 1: 3-603 bp Neighborhood of RT #1 [3, 734] RVT-GII RVT-GII Feature: gene Location: 3-227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-2 2 2 bp Feature: gene Location: 255-734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 5-603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NLNQ01000026.1 Escherichia coli strain MOD1-EC5500 MOD1-EC5500_26_length_66207_cov_44.6632, whole genome shotgun sequence (66207 bp)
Overview 1 RT 1: 6731-10283 bp Neighborhood of RT #1 [6731, 10288] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 6731-6895 bp Feature: gene Location: 6906-7103 bp Feature: domain Description: PRK09413 Location: 6909-7071 bp Feature: domain Description: PRK09413 Location: 6909-7071 bp Feature: gene Location: 7579-8931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-8518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-8518 bp Feature: domain Description: GIIM Note: maturase Location: 8566-8797 bp Feature: domain Description: GIIM Note: maturase Location: 8566-8797 bp Feature: gene Location: 9140-9541 bp Feature: gene Location: 9641-10288 bp Feature: domain Description: PinE Location: 9734-10283 bp Feature: domain Description: PinE Location: 973 4-10283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: NLNQ01000059.1 Escherichia coli strain MOD1-EC5500 MOD1-EC5500_59_length_24558_cov_49.9919, whole genome shotgun sequence (24558 bp)
Overview 1 RT 1: 20998-24172 bp Neighborhood of RT #1 [20998, 24172] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 20998-22029 bp Feature: domain Description: LacI Location: 21040-21175 bp Feature: domain Description: LacI Location: 2104 0-21175 bp Feature: domain Description: PBP1_GntR Location: 21214-22024 bp Feature: domain Description: PBP1_GntR Location: 21214 -22024 bp Feature: gene Location: 22160-22378 bp Feature: gene Location: 22556-23290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22562-22850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22562-22850 bp Feature: domain Description: GIIM Note: maturase Location: 22898-23120 bp Feature: domain Description: GIIM Note: maturase Location: 22898-23120 bp Feature: gene Location: 23318-23806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23510-23804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23510-23804 bp Feature: gene Location: 23975-24172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)