myRT

myRT report for GCA_002229415.1_ASM222941v1

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Seq: NLMV01000051.1 Escherichia coli strain MOD1-EC5521 MOD1-EC5521_51_length_34047_cov_54.7484, whole genome shotgun sequence (34047 bp)
Overview 1 RT 1: 67-7959 bp Neighborhood of RT #1 [67, 7970] RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 67-270 bp Feature: gene Location: 509-2527 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1079-1529 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 079-1 529 bp Feature: gene Location: 3783-5243 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4158-4365 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 41 58-4365 bp Feature: domain Description: INT_P4_C Location: 4584-5121 bp Feature: domain Description: INT_P4_C Location: 4584-51 21 bp Feature: gene Location: 5388-7970 bp Feature: domain Description: mutS1 Location: 5439-7959 bp Feature: domain Description: mutS1 Location: 5439-7959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: NLMV01000083.1 Escherichia coli strain MOD1-EC5521 MOD1-EC5521_83_length_17288_cov_124.241, whole genome shotgun sequence (17288 bp)
Overview 1 RT 1: 10630-13764 bp Neighborhood of RT #1 [10630, 13764] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 10630-11097 bp Feature: domain Description: DUF1380 Location: 10690-10978 bp Feature: domain Description: DUF1380 Location: 10690-10978 bp Feature: gene Location: 11152-11487 bp Feature: gene Location: 11602-13269 bp Feature: domain Description: RVT_N Location: 11650-11887 bp Feature: domain Description: RVT_N Location: 11650-11887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11938-12580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11938-12 580 bp Feature: domain Description: GIIM Note: maturase Location: 12631-12865 bp Feature: domain Description: GIIM Note: maturase Location: 12 631-12 865 bp Feature: domain Description: HNHc Note: nucleases Location: 13075-13234 bp Feature: domain Description: HNHc Note: nucleases Location: 13075-132 34 bp Feature: gene Location: 13285-13422 bp Feature: gene Location: 13549-13764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)