myRT

myRT report for GCA_002229455.1_ASM222945v1

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Seq: NLNN01000112.1 Escherichia coli strain MOD1-EC5503 MOD1-EC5503_112_length_4201_cov_401.29, whole genome shotgun sequence (4200 bp)
Overview 1 RT 1: 1718-3863 bp Neighborhood of RT #1 [1718, 3863] CspC RVT-Retrons Feature: gene Location: 1718-1879 bp Feature: gene Location: 2067-2270 bp Feature: domain Description: CspC Location: 2070-2265 bp Feature: domain Description: CspC Location: 2070-2265 bp Feature: gene Location: 2275-3414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2419-2974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241 9-2974 bp Feature: gene Location: 3436-3618 bp Feature: gene Location: 3708-3863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons

Seq: NLNN01000135.1 Escherichia coli strain MOD1-EC5503 MOD1-EC5503_135_length_2799_cov_87.3706, whole genome shotgun sequence (2799 bp)
Overview 1 RT 1: 2-2793 bp Neighborhood of RT #1 [2, 2798] RVT_N RVT-GII YkfC HNHc DUF1281 Feature: gene Location: 2-205 bp Feature: gene Location: 686-826 bp Feature: gene Location: 848-2572 bp Feature: domain Description: RVT_N Location: 905-1142 bp Feature: domain Description: RVT_N Location: 905-1142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193-1841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193-1841 bp Feature: domain Description: YkfC Location: 1973-2129 bp Feature: domain Description: YkfC Location: 1973-2 12 9 bp Feature: domain Description: HNHc Note: nucleases Location: 2357-2516 bp Feature: domain Description: HNHc Note: nucleases Location: 2 357-2 516 bp Feature: gene Location: 2649-2798 bp Feature: domain Description: DUF1281 Location: 2718-2793 bp Feature: domain Description: DUF12 81 Location: 2 718-2 793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924)

Seq: NLNN01000028.1 Escherichia coli strain MOD1-EC5503 MOD1-EC5503_28_length_56255_cov_29.4877, whole genome shotgun sequence (56255 bp)
Overview 1 RT 1: 55-2959 bp Neighborhood of RT #1 [55, 2967] RVT-UG4 PRK15211 Feature: gene Location: 55-906 bp Feature: gene Location: 935-1528 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1118-1256 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1118-1256 bp Feature: gene Location: 1684-2265 bp Feature: gene Location: 2272-2967 bp Feature: domain Description: PRK15211 Location: 2278-2959 bp Feature: domain Description: PRK15211 Location: 2278-2959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK15211 (fimbrial chaperone)

Seq: NLNN01000084.1 Escherichia coli strain MOD1-EC5503 MOD1-EC5503_84_length_11091_cov_29.6819, whole genome shotgun sequence (11091 bp)
Overview 1 RT 1: 3-2595 bp Neighborhood of RT #1 [3, 2595] RVT-UG4 Feature: gene Location: 3-500 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 54-420 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 54 -4 20 bp Feature: gene Location: 634-1140 bp Feature: gene Location: 1699-2595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4