myRT

myRT report for GCA_002229465.1_ASM222946v1

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Seq: NLMX01000025.1 Escherichia coli strain MOD1-EC5519 MOD1-EC5519_25_length_67057_cov_38.1735, whole genome shotgun sequence (67057 bp)
Overview 1 RT 1: 11850-15380 bp Neighborhood of RT #1 [11850, 15380] zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 11850-13085 bp Feature: domain Description: zf-IS66 Location: 12078-12162 bp Feature: domain Description: zf-IS66 Location: 1 2078-1 21 62 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12207-13044 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 2207-1 3044 bp Feature: gene Location: 13293-13454 bp Feature: gene Location: 13547-14779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13748-14402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3748-1 4402 bp Feature: domain Description: GIIM Note: maturase Location: 14480-14702 bp Feature: domain Description: GIIM Note: maturase Location: 1 4480-1 4702 bp Feature: gene Location: 14895-15041 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14907-15018 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 4907-1 501 8 bp Feature: gene Location: 15105-15380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: NLMX01000079.1 Escherichia coli strain MOD1-EC5519 MOD1-EC5519_79_length_16645_cov_45.2392, whole genome shotgun sequence (16645 bp)
Overview 1 RT 1: 3050-6748 bp Neighborhood of RT #1 [3050, 6748] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3050-3271 bp Feature: gene Location: 3272-4036 bp Feature: domain Description: PRK13699 Location: 3425-4034 bp Feature: domain Description: PRK13699 Location: 342 5-4034 bp Feature: gene Location: 4506-6206 bp Feature: RT Description: RVT_N Location: 4560-4803 bp Feature: RT Description: RVT_N Location: 4560-4803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4848-5484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4848-5484 bp Feature: domain Description: GIIM Note: maturase Location: 5535-5769 bp Feature: domain Description: GIIM Note: maturase Location: 5535-5769 bp Feature: domain Description: HNHc Note: nucleases Location: 6000-6150 bp Feature: domain Description: HNHc Note: nucleases Location: 6000-6150 bp Feature: gene Location: 6289-6495 bp Feature: gene Location: 6536-6748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)