myRT

myRT report for GCA_002229575.1_ASM222957v1

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Seq: NLNF01000045.1 Escherichia coli strain MOD1-EC5511 MOD1-EC5511_45_length_19692_cov_60.5362, whole genome shotgun sequence (19692 bp)
Overview 1 RT 1: 4576-7724 bp Neighborhood of RT #1 [4576, 7738] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 4576-5079 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4687-5077 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4687-5077 bp Feature: gene Location: 4998-5273 bp Feature: domain Description: InsA Location: 5001-5265 bp Feature: domain Description: InsA Location: 5001 -5265 bp Feature: gene Location: 5425-6912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5830-6520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5830-6520 bp Feature: gene Location: 6918-7085 bp Feature: gene Location: 7313-7738 bp Feature: domain Description: PRK10276 Location: 7316-7724 bp Feature: domain Description: PRK1 0276 Location: 731 6-7724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NLNF01000007.1 Escherichia coli strain MOD1-EC5511 MOD1-EC5511_7_length_194911_cov_72.0378, whole genome shotgun sequence (194911 bp)
Overview 1 RT 1: 110661-116706 bp Neighborhood of RT #1 [110661, 116708] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 110661-110837 bp Feature: gene Location: 111231-111383 bp Feature: domain Description: Pox_D5 Location: 111234-111357 bp Feature: domain Description: Pox_D5 Location: 1112 34-111357 bp Feature: gene Location: 111621-113252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111936-112533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111936-112 533 bp Feature: domain Description: TIR_2 Location: 112857-113214 bp Feature: domain Description: TIR_2 Location: 112 857-1132 14 bp Feature: gene Location: 113839-116172 bp Feature: domain Description: Prim_Zn_Ribbon Location: 113929-114037 bp Feature: domain Description: Prim_Zn_Ribbon Location: 11392 9-114037 bp Feature: domain Description: COG3378 Location: 114646-116161 bp Feature: domain Description: COG3378 Location: 114646-116161 bp Feature: gene Location: 116187-116708 bp Feature: domain Description: DUF5375 Location: 116391-116706 bp Feature: domain Description: DUF5375 Location: 116391-116706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)