myRT

myRT report for GCA_002229875.1_ASM222987v1

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Seq: NLNW01000137.1 Escherichia coli strain MOD1-EC5492 MOD1-EC5492_137_length_6027_cov_93.2798, whole genome shotgun sequence (6027 bp)
Overview 1 RT 1: 298-6027 bp Neighborhood of RT #1 [298, 6026] PHA02517 RVT-GII GIIM Rve RVT-GII GIIM HNHc Feature: gene Location: 298-483 bp Feature: gene Location: 1207-1653 bp Feature: domain Description: PHA02517 Location: 1210-1651 bp Feature: domain Description: PHA0251 7 Location: 1 21 0-1 651 bp Feature: gene Location: 1770-3293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2043-2775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2043-2775 bp Feature: domain Description: GIIM Note: maturase Location: 2850-3048 bp Feature: domain Description: GIIM Note: maturase Location: 2850-3048 bp Feature: gene Location: 3587-3874 bp Feature: gene Location: 3909-4625 bp Feature: domain Description: Rve Location: 3924-4569 bp Feature: domain Description: Rve Location: 3924-4569 bp Feature: gene Location: 4770-6026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4773-5364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4773-5364 bp Feature: domain Description: GIIM Note: maturase Location: 5415-5649 bp Feature: domain Description: GIIM Note: maturase Location: 541 5-5649 bp Feature: domain Description: HNHc Note: nucleases Location: 5880-6027 bp Feature: domain Description: HNHc Note: nucleases Location: 5880-6027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rve (COG3316), HNHc (smart00507)

Seq: NLNW01000221.1 Escherichia coli strain MOD1-EC5492 MOD1-EC5492_221_length_643_cov_513.459, whole genome shotgun sequence (643 bp)
Overview 1 RT 1: 3-630 bp Neighborhood of RT #1 [3, 641] RVT-GII Feature: gene Location: 3-641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NLNW01000006.1 Escherichia coli strain MOD1-EC5492 MOD1-EC5492_6_length_97357_cov_101.093, whole genome shotgun sequence (97357 bp)
Overview 1 RT 1: 60183-68184 bp Neighborhood of RT #1 [60183, 68195] uvrA PRK09010 RVT-GII GIIM YjcB YjcC Feature: gene Location: 60183-63005 bp Feature: domain Description: uvrA Location: 60186-63003 bp Feature: domain Description: uvrA Location: 60186-63 003 bp Feature: gene Location: 63202-63795 bp Feature: domain Description: PRK09010 Location: 63262-63793 bp Feature: domain Description: PRK09010 Location: 63 262-63 793 bp Feature: gene Location: 64355-65692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64658-65291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64658-65291 bp Feature: domain Description: GIIM Note: maturase Location: 65363-65585 bp Feature: domain Description: GIIM Note: maturase Location: 653 63 -65585 bp Feature: gene Location: 65898-66179 bp Feature: domain Description: YjcB Location: 65901-66168 bp Feature: domain Description: YjcB Location: 65901-66168 bp Feature: gene Location: 66609-68195 bp Feature: domain Description: YjcC Location: 66612-68184 bp Feature: domain Description: YjcC Location: 66612-68184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT uvrA (PRK00349), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, GIIM (pfam08388), YjcB (pfam15940), YjcC (COG4943)