myRT

myRT report for GCA_002229955.1_ASM222995v1

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Seq: NLOR01000045.1 Escherichia coli strain MOD1-EC5469 MOD1-EC5469_45_length_22845_cov_104.919, whole genome shotgun sequence (22845 bp)
Overview 1 RT 1: 9009-12715 bp Neighborhood of RT #1 [9009, 12720] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 9009-9179 bp Feature: gene Location: 9538-9735 bp Feature: gene Location: 9904-10338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10096-10312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0096-1 031 2 bp Feature: gene Location: 10311-11162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10314-10722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 031 4-1 0722 bp Feature: domain Description: GIIM Note: maturase Location: 10770-10995 bp Feature: domain Description: GIIM Note: maturase Location: 1 0770-1 0995 bp Feature: gene Location: 11340-11558 bp Feature: gene Location: 11689-12720 bp Feature: domain Description: LacI Location: 11731-11866 bp Feature: domain Description: LacI Location: 1 1 731 -1 1 866 bp Feature: domain Description: PBP1_GntR Location: 11905-12715 bp Feature: domain Description: PBP1 _GntR Location: 1 1 905-1 271 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: NLOR01000047.1 Escherichia coli strain MOD1-EC5469 MOD1-EC5469_47_length_20074_cov_110.041, whole genome shotgun sequence (20074 bp)
Overview 1 RT 1: 3891-6962 bp Neighborhood of RT #1 [3891, 7012] PRK09413 RVT-UG4 PRK10954 Feature: gene Location: 3891-4259 bp Feature: domain Description: PRK09413 Location: 3906-4257 bp Feature: domain Description: PRK09413 Location: 3906-42 57 bp Feature: gene Location: 4268-5110 bp Feature: gene Location: 5034-6131 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5391-5835 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5391-5835 bp Feature: gene Location: 6152-6439 bp Feature: gene Location: 6521-7012 bp Feature: domain Description: PRK10954 Location: 6587-6962 bp Feature: domain Description: PRK10954 Location: 6587-6962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-UG4, PRK10954 (thiol:disulfide interchange protein DsbA)

Seq: NLOR01000068.1 Escherichia coli strain MOD1-EC5469 MOD1-EC5469_74_length_5380_cov_110.355, whole genome shotgun sequence (5380 bp)
Overview 1 RT 1: 2079-5378 bp Neighborhood of RT #1 [2079, 5378] PRK09738 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2079-2267 bp Feature: gene Location: 2347-2505 bp Feature: domain Description: PRK09738 Location: 2350-2503 bp Feature: domain Description: PRK0973 8 Location: 23 50-2503 bp Feature: gene Location: 2901-4568 bp Feature: domain Description: RVT_N Location: 2949-3186 bp Feature: domain Description: RVT_N Location: 2949-3 186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237-3879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 7-3 879 bp Feature: domain Description: GIIM Note: maturase Location: 3930-4164 bp Feature: domain Description: GIIM Note: maturase Location: 3 93 0-4164 bp Feature: domain Description: HNHc Note: nucleases Location: 4374-4533 bp Feature: domain Description: HNHc Note: nucleases Location: 43 74-453 3 bp Feature: gene Location: 4848-5030 bp Feature: gene Location: 5142-5378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)