myRT

myRT report for GCA_002230145.1_ASM223014v1

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Seq: NLPB01000026.1 Escherichia coli strain MOD1-EC5456 MOD1-EC5456_26_length_64584_cov_55.9289, whole genome shotgun sequence (64584 bp)
Overview 1 RT 1: 7799-11157 bp 2 RT 2: 35540-38694 bp Neighborhood of RT #1 [7799, 11222] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [35540, 38694] RVT-GII RVT-GII GIIM Feature: gene Location: 7799-8149 bp Feature: domain Description: InsE Location: 7808-8096 bp Feature: domain Description: InsE Location: 7808-8096 bp Feature: gene Location: 8254-8700 bp Feature: domain Description: PHA02517 Location: 8257-8698 bp Feature: domain Description: PHA0251 7 Location: 8257-8698 bp Feature: gene Location: 8817-10340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9090-9822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9090-9822 bp Feature: domain Description: GIIM Note: maturase Location: 9897-10095 bp Feature: domain Description: GIIM Note: maturase Location: 9897-1 0095 bp Feature: gene Location: 10294-10719 bp Feature: gene Location: 10932-11222 bp Feature: domain Description: PHA02517 Location: 10938-11157 bp Feature: domain Description: PHA0251 7 Location: 1 0938-1 1 1 57 bp Feature: gene Location: 35540-36445 bp Feature: gene Location: 36583-36774 bp Feature: gene Location: 36931-37470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37261-37339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37261 -37339 bp Feature: gene Location: 37498-38019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37504-37786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37504-37786 bp Feature: domain Description: GIIM Note: maturase Location: 37834-38014 bp Feature: domain Description: GIIM Note: maturase Location: 37834-3801 4 bp Feature: gene Location: 38118-38396 bp Feature: gene Location: 38506-38694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NLPB01000007.1 Escherichia coli strain MOD1-EC5456 MOD1-EC5456_7_length_165993_cov_48.9803, whole genome shotgun sequence (165993 bp)
Overview 1 RT 1: 22186-28429 bp Neighborhood of RT #1 [22186, 28566] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22186-22452 bp Feature: domain Description: Phage_integrase Location: 22252-22348 bp Feature: domain Description: Phage_integrase Location: 2 2 2 52 -2 2 348 bp Feature: gene Location: 22535-23005 bp Feature: gene Location: 23352-26561 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23880-24369 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3880-2 4369 bp Feature: domain Description: nitrilase Location: 25875-26472 bp Feature: domain Description: nitrilase Location: 2 5875-2 6472 bp Feature: gene Location: 26856-27659 bp Feature: domain Description: AbiEi_3_N Location: 26889-27150 bp Feature: domain Description: AbiEi_3_N Location: 2 6889-2 7150 bp Feature: domain Description: AbiEi_3 Location: 27162-27618 bp Feature: domain Description: AbiEi_3 Location: 2 7162 -2 7618 bp Feature: gene Location: 27646-28566 bp Feature: domain Description: AbiEii Location: 27688-28429 bp Feature: domain Description: AbiEii Location: 2 7688-2 842 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)