myRT

myRT report for GCA_002230355.1_ASM223035v1

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Seq: NLPF01000059.1 Escherichia coli strain MOD1-EC5450 MOD1-EC5450_61_length_14966_cov_3.69533, whole genome shotgun sequence (14966 bp)
Overview 1 RT 1: 3173-6884 bp Neighborhood of RT #1 [3173, 6884] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 3173-4204 bp Feature: domain Description: LacI Location: 3215-3350 bp Feature: domain Description: LacI Location: 321 5-3350 bp Feature: domain Description: PBP1_GntR Location: 3389-4199 bp Feature: domain Description: PBP1 _GntR Location: 3389-41 99 bp Feature: gene Location: 4335-4553 bp Feature: gene Location: 4731-5582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4734-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4734-51 42 bp Feature: domain Description: GIIM Note: maturase Location: 5190-5415 bp Feature: domain Description: GIIM Note: maturase Location: 51 90-541 5 bp Feature: gene Location: 5555-5989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5747-5963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5747-5963 bp Feature: gene Location: 6158-6355 bp Feature: gene Location: 6714-6884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)

Seq: NLPF01000063.1 Escherichia coli strain MOD1-EC5450 MOD1-EC5450_66_length_12469_cov_13.8866, whole genome shotgun sequence (12469 bp)
Overview 1 RT 1: 3555-6626 bp Neighborhood of RT #1 [3555, 6676] PRK09413 RVT-UG4 PRK10954 Feature: gene Location: 3555-3923 bp Feature: domain Description: PRK09413 Location: 3570-3921 bp Feature: domain Description: PRK09413 Location: 3570-392 1 bp Feature: gene Location: 3932-4774 bp Feature: gene Location: 4698-5795 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5055-5499 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5055-5499 bp Feature: gene Location: 5816-6103 bp Feature: gene Location: 6185-6676 bp Feature: domain Description: PRK10954 Location: 6251-6626 bp Feature: domain Description: PRK10954 Location: 62 51-662 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-UG4, PRK10954 (thiol:disulfide interchange protein DsbA)

Seq: NLPF01000078.1 Escherichia coli strain MOD1-EC5450 MOD1-EC5450_85_length_7524_cov_35.1228, whole genome shotgun sequence (7524 bp)
Overview 1 RT 1: 183-4104 bp Neighborhood of RT #1 [183, 4109] RVT_N RVT-GII GIIM HNHc PRK13704 Feature: gene Location: 183-365 bp Feature: gene Location: 645-2312 bp Feature: domain Description: RVT_N Location: 693-930 bp Feature: domain Description: RVT_N Location: 693 -93 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981-1623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981-1623 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1908 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 2118-2277 bp Feature: domain Description: HNHc Note: nucleases Location: 2118-2277 bp Feature: gene Location: 3079-3393 bp Feature: gene Location: 3390-4109 bp Feature: domain Description: PRK13704 Location: 3393-4104 bp Feature: domain Description: PRK13 704 Location: 3 3 93 -4104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13704 (plasmid SOS inhibition protein A; Provisional)