myRT

myRT report for GCA_002230365.1_ASM223036v1

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Seq: NLQB01000150.1 Escherichia coli strain MOD1-EC5268 MOD1-EC5268_150_length_1923_cov_93.9888, whole genome shotgun sequence (1923 bp)
Overview 1 RT 1: 78-1921 bp Neighborhood of RT #1 [78, 1921] RVT-GII GIIM Feature: gene Location: 78-1466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1 026 bp Feature: domain Description: GIIM Note: maturase Location: 1074-1305 bp Feature: domain Description: GIIM Note: maturase Location: 1 074-1 305 bp Feature: gene Location: 1694-1921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLQB01000176.1 Escherichia coli strain MOD1-EC5268 MOD1-EC5268_176_length_1172_cov_292.705, whole genome shotgun sequence (1172 bp)
Overview 1 RT 1: 2-929 bp Neighborhood of RT #1 [2, 1075] RVT-GII GIIM Feature: gene Location: 2-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-662 bp Feature: domain Description: GIIM Note: maturase Location: 710-929 bp Feature: domain Description: GIIM Note: maturase Location: 710-92 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLQB01000040.1 Escherichia coli strain MOD1-EC5268 MOD1-EC5268_40_length_46075_cov_33.0424, whole genome shotgun sequence (46075 bp)
Overview 1 RT 1: 40061-43741 bp Neighborhood of RT #1 [40061, 43741] YhhI YhhI YhhI group_II_RT_mat RVT-GII Feature: gene Location: 40061-41197 bp Feature: domain Description: YhhI Location: 40064-40427 bp Feature: domain Description: YhhI Location: 40064-40427 bp Feature: domain Description: YhhI Location: 40484-40838 bp Feature: domain Description: YhhI Location: 40484-4083 8 bp Feature: domain Description: YhhI Location: 40856-41105 bp Feature: domain Description: YhhI Location: 40856-41105 bp Feature: gene Location: 41547-41798 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41553-41781 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41553 -41781 bp Feature: gene Location: 41820-42899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42291-42882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42291-42882 bp Feature: gene Location: 43076-43300 bp Feature: gene Location: 43343-43741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), group_II_RT_mat (TIGR04416), RVT-GII

Seq: NLQB01000066.1 Escherichia coli strain MOD1-EC5268 MOD1-EC5268_66_length_22792_cov_34.9121, whole genome shotgun sequence (22792 bp)
Overview 1 RT 1: 12651-16477 bp Neighborhood of RT #1 [12651, 16477] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 12651-13169 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12669-13014 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12669-13014 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13035-13146 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13035-1314 6 bp Feature: gene Location: 13304-13516 bp Feature: domain Description: PHA02517 Location: 13307-13451 bp Feature: domain Description: PHA02517 Location: 13307-134 51 bp Feature: gene Location: 14108-15631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14381-15113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 381-15113 bp Feature: domain Description: GIIM Note: maturase Location: 15188-15386 bp Feature: domain Description: GIIM Note: maturase Location: 15188-15386 bp Feature: gene Location: 15748-16194 bp Feature: domain Description: PHA02517 Location: 15751-16192 bp Feature: domain Description: PHA02517 Location: 15751-16192 bp Feature: gene Location: 16160-16477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)