myRT

myRT report for GCA_002230915.1_ASM223091v1

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Seq: NLQF01000017.1 Escherichia coli strain MOD1-EC5227 MOD1-EC5227_17_length_90319_cov_76.7167, whole genome shotgun sequence (90319 bp)
Overview 1 RT 1: 37169-41051 bp Neighborhood of RT #1 [37169, 41056] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 37169-37885 bp Feature: domain Description: rph Location: 37172-37880 bp Feature: domain Description: rph Location: 371 72-37880 bp Feature: gene Location: 37936-38592 bp Feature: domain Description: pyrE Location: 37954-38587 bp Feature: domain Description: pyrE Location: 37954-38587 bp Feature: gene Location: 38890-39849 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39025-39574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39025-39574 bp Feature: gene Location: 39895-40491 bp Feature: domain Description: slmA Location: 39901-40477 bp Feature: domain Description: slmA Location: 39901 -40477 bp Feature: gene Location: 40598-41056 bp Feature: domain Description: dut Location: 40604-41051 bp Feature: domain Description: dut Location: 40604-41 051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NLQF01000031.1 Escherichia coli strain MOD1-EC5227 MOD1-EC5227_31_length_40188_cov_103.833, whole genome shotgun sequence (40188 bp)
Overview 1 RT 1: 6624-10416 bp Neighborhood of RT #1 [6624, 10416] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 6624-6893 bp Feature: gene Location: 7374-7514 bp Feature: gene Location: 7536-9260 bp Feature: RT Description: RVT_N Location: 7593-7830 bp Feature: RT Description: RVT_N Location: 7593-7830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7881-8529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7881-852 9 bp Feature: domain Description: YkfC Location: 8661-8817 bp Feature: domain Description: YkfC Location: 8661-8817 bp Feature: domain Description: HNHc Note: nucleases Location: 9045-9204 bp Feature: domain Description: HNHc Note: nucleases Location: 9045-92 04 bp Feature: gene Location: 9337-10239 bp Feature: domain Description: DUF1281 Location: 9406-9934 bp Feature: domain Description: DUF12 81 Location: 9406-9934 bp Feature: domain Description: DUF1281_C Location: 9940-10180 bp Feature: domain Description: DUF12 81_C Location: 9940-10180 bp Feature: gene Location: 10243-10416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: NLQF01000045.1 Escherichia coli strain MOD1-EC5227 MOD1-EC5227_45_length_13493_cov_99.2663, whole genome shotgun sequence (13493 bp)
Overview 1 RT 1: 7215-10266 bp Neighborhood of RT #1 [7215, 10391] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 7215-7634 bp Feature: domain Description: PHA02517 Location: 7218-7623 bp Feature: domain Description: PHA02517 Location: 7218-7623 bp Feature: gene Location: 7757-7942 bp Feature: gene Location: 8115-8927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8208-8787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8208-8787 bp Feature: gene Location: 8788-9804 bp Feature: domain Description: YkfC Location: 9484-9754 bp Feature: domain Description: YkfC Location: 9484-9754 bp Feature: gene Location: 9885-10391 bp Feature: domain Description: HlyC Location: 9906-10266 bp Feature: domain Description: HlyC Location: 9906-10266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)

Seq: NLQF01000063.1 Escherichia coli strain MOD1-EC5227 MOD1-EC5227_63_length_6184_cov_77.1484, whole genome shotgun sequence (6184 bp)
Overview 1 RT 1: 1-4789 bp Neighborhood of RT #1 [1, 4789] P Q RVT-Retrons Feature: gene Location: 1-1527 bp Feature: domain Description: P Location: 4-1522 bp Feature: domain Description: P Location: 4 -1522 bp Feature: gene Location: 1527-2552 bp Feature: domain Description: Q Location: 1530-2544 bp Feature: domain Description: Q Location: 1530-254 4 bp Feature: gene Location: 2588-3517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2687-3272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2687-3272 bp Feature: gene Location: 3519-4571 bp Feature: gene Location: 4637-4789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons