myRT

myRT report for GCA_002231005.1_ASM223100v1

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Seq: NLPV01000024.1 Escherichia coli strain MOD1-EC5274 MOD1-EC5274_24_length_68673_cov_42.6888, whole genome shotgun sequence (68673 bp)
Overview 1 RT 1: 13403-17285 bp Neighborhood of RT #1 [13403, 17290] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 13403-14119 bp Feature: domain Description: rph Location: 13406-14114 bp Feature: domain Description: rph Location: 1 3406-1 41 1 4 bp Feature: gene Location: 14170-14826 bp Feature: domain Description: pyrE Location: 14188-14821 bp Feature: domain Description: pyrE Location: 1 41 88-1 4821 bp Feature: gene Location: 15124-16083 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15259-15808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5259-1 5808 bp Feature: gene Location: 16129-16725 bp Feature: domain Description: slmA Location: 16135-16711 bp Feature: domain Description: slmA Location: 1 61 35-1 671 1 bp Feature: gene Location: 16832-17290 bp Feature: domain Description: dut Location: 16838-17285 bp Feature: domain Description: dut Location: 1 6838-1 7285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NLPV01000059.1 Escherichia coli strain MOD1-EC5274 MOD1-EC5274_59_length_25673_cov_32.5573, whole genome shotgun sequence (25673 bp)
Overview 1 RT 1: 379-2926 bp Neighborhood of RT #1 [379, 2928] RVT-UG11 SmpB PRK10724 Feature: gene Location: 379-1152 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 514-967 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 514-967 bp Feature: gene Location: 1838-2320 bp Feature: domain Description: SmpB Location: 1868-2315 bp Feature: domain Description: SmpB Location: 1868-2 315 bp Feature: gene Location: 2452-2928 bp Feature: domain Description: PRK10724 Location: 2458-2926 bp Feature: domain Description: PRK1072 4 Location: 2 458-2 92 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NLPV01000069.1 Escherichia coli strain MOD1-EC5274 MOD1-EC5274_69_length_16395_cov_14.9714, whole genome shotgun sequence (16395 bp)
Overview 1 RT 1: 339-2980 bp Neighborhood of RT #1 [339, 2980] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 339-596 bp Feature: gene Location: 653-787 bp Feature: gene Location: 812-2512 bp Feature: domain Description: RVT_N Location: 866-1109 bp Feature: domain Description: RVT_N Location: 866-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1790 bp Feature: domain Description: GIIM Note: maturase Location: 1841-2075 bp Feature: domain Description: GIIM Note: maturase Location: 1841-2075 bp Feature: domain Description: HNHc Note: nucleases Location: 2306-2456 bp Feature: domain Description: HNHc Note: nucleases Location: 23 06-2456 bp Feature: gene Location: 2595-2801 bp Feature: gene Location: 2828-2980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NLPV01000076.1 Escherichia coli strain MOD1-EC5274 MOD1-EC5274_76_length_11054_cov_9.90072, whole genome shotgun sequence (11054 bp)
Overview 1 RT 1: 92-2322 bp Neighborhood of RT #1 [92, 2322] RVT-GII GIIM PHA02517 Feature: gene Location: 92-1438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188-920 bp Feature: domain Description: GIIM Note: maturase Location: 995-1193 bp Feature: domain Description: GIIM Note: maturase Location: 995-1193 bp Feature: gene Location: 1555-2001 bp Feature: domain Description: PHA02517 Location: 1558-1999 bp Feature: domain Description: PHA02517 Location: 1558-1999 bp Feature: gene Location: 2059-2322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NLPV01000078.1 Escherichia coli strain MOD1-EC5274 MOD1-EC5274_78_length_10418_cov_14.2299, whole genome shotgun sequence (10418 bp)
Overview 1 RT 1: 7630-10194 bp Neighborhood of RT #1 [7630, 10214] TnpB_IS66 RVT_N RVT-GII InsA InsE Feature: gene Location: 7630-7941 bp Feature: domain Description: TnpB_IS66 Location: 7657-7936 bp Feature: domain Description: TnpB_IS66 Location: 765 7-7936 bp Feature: gene Location: 8148-8288 bp Feature: gene Location: 8539-9462 bp Feature: domain Description: RVT_N Location: 8587-8830 bp Feature: domain Description: RVT_N Location: 85 87-8830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8875-9445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8875 -9445 bp Feature: gene Location: 9491-9763 bp Feature: domain Description: InsA Location: 9494-9710 bp Feature: domain Description: InsA Location: 9494-9710 bp Feature: gene Location: 9795-10214 bp Feature: domain Description: InsE Location: 9810-10194 bp Feature: domain Description: InsE Location: 9810-10194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, InsA (COG3677), InsE (COG2963)

Seq: NLPV01000087.1 Escherichia coli strain MOD1-EC5274 MOD1-EC5274_87_length_8014_cov_18.6946, whole genome shotgun sequence (8014 bp)
Overview 1 RT 1: 102-2851 bp Neighborhood of RT #1 [102, 2851] PRK13720 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 102-317 bp Feature: domain Description: PRK13720 Location: 105-312 bp Feature: domain Description: PRK13720 Location: 105-312 bp Feature: gene Location: 352-744 bp Feature: gene Location: 722-2389 bp Feature: domain Description: RVT_N Location: 770-1007 bp Feature: domain Description: RVT_N Location: 770-1007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1058-1700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1058-1700 bp Feature: domain Description: GIIM Note: maturase Location: 1751-1985 bp Feature: domain Description: GIIM Note: maturase Location: 1751-1985 bp Feature: domain Description: HNHc Note: nucleases Location: 2195-2354 bp Feature: domain Description: HNHc Note: nucleases Location: 2195-2354 bp Feature: gene Location: 2405-2542 bp Feature: gene Location: 2669-2851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13720 (modulator of post-segregation killing protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)