myRT

myRT report for GCA_002231085.1_ASM223108v1

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Seq: NLQG01000023.1 Escherichia coli strain MOD1-EC5226 MOD1-EC5226_23_length_66683_cov_63.2846, whole genome shotgun sequence (66683 bp)
Overview 1 RT 1: 531-7981 bp Neighborhood of RT #1 [531, 7992] RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 531-2549 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1101-1551 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 1 01 -1 551 bp Feature: gene Location: 3805-5265 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4180-4387 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 41 80-4387 bp Feature: domain Description: INT_P4_C Location: 4606-5143 bp Feature: domain Description: INT_P4_C Location: 4606-51 43 bp Feature: gene Location: 5410-7992 bp Feature: domain Description: mutS1 Location: 5461-7981 bp Feature: domain Description: mutS1 Location: 5461 -7981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: NLQG01000005.1 Escherichia coli strain MOD1-EC5226 MOD1-EC5226_5_length_249149_cov_67.9059, whole genome shotgun sequence (249149 bp)
Overview 1 RT 1: 145507-148803 bp Neighborhood of RT #1 [145507, 148817] CdiI_3 RVT-GII RVT-GII GIIM ArgR Feature: gene Location: 145507-145893 bp Feature: domain Description: CdiI_3 Location: 145531-145807 bp Feature: domain Description: CdiI_3 Location: 145531-145807 bp Feature: gene Location: 146039-146233 bp Feature: gene Location: 146341-146823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146662-146749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146662 -146749 bp Feature: gene Location: 146862-147632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146865-147279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146865-1472 79 bp Feature: domain Description: GIIM Note: maturase Location: 147330-147495 bp Feature: domain Description: GIIM Note: maturase Location: 147330-147495 bp Feature: gene Location: 147882-148100 bp Feature: gene Location: 148338-148817 bp Feature: domain Description: ArgR Location: 148371-148803 bp Feature: domain Description: ArgR Location: 148371-148803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), ArgR (COG1438)