myRT

myRT report for GCA_002231535.1_ASM223153v1

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Seq: NLRR01000015.1 Escherichia coli strain MOD1-EC5172 MOD1-EC5172_15_length_94558_cov_92.5941, whole genome shotgun sequence (94558 bp)
Overview 1 RT 1: 22187-29888 bp Neighborhood of RT #1 [22187, 30025] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22187-23440 bp Feature: domain Description: proA Location: 22214-23405 bp Feature: domain Description: proA Location: 2221 4-23405 bp Feature: gene Location: 23994-24464 bp Feature: gene Location: 24811-28020 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 25339-25828 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 25339-25828 bp Feature: domain Description: nitrilase Location: 27334-27931 bp Feature: domain Description: nitrilase Location: 27334-27931 bp Feature: gene Location: 28315-29118 bp Feature: domain Description: AbiEi_3_N Location: 28348-28609 bp Feature: domain Description: AbiEi_3_N Location: 28348-28609 bp Feature: domain Description: AbiEi_3 Location: 28621-29077 bp Feature: domain Description: AbiEi_3 Location: 28621 -29077 bp Feature: gene Location: 29105-30025 bp Feature: domain Description: AbiEii Location: 29147-29888 bp Feature: domain Description: AbiEii Location: 291 47-29888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NLRR01000004.1 Escherichia coli strain MOD1-EC5172 MOD1-EC5172_4_length_213188_cov_93.5262, whole genome shotgun sequence (213188 bp)
Overview 1 RT 1: 69563-72973 bp Neighborhood of RT #1 [69563, 72978] RVT-Retrons Q Feature: gene Location: 69563-69706 bp Feature: gene Location: 69814-69954 bp Feature: gene Location: 70022-71212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70172-70754 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70172 -70754 bp Feature: gene Location: 71209-71916 bp Feature: gene Location: 71959-72978 bp Feature: domain Description: Q Location: 71962-72973 bp Feature: domain Description: Q Location: 71962 -72 973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536)

Seq: NLRR01000057.1 Escherichia coli strain MOD1-EC5172 MOD1-EC5172_57_length_18582_cov_102.885, whole genome shotgun sequence (18582 bp)
Overview 1 RT 1: 2634-6634 bp Neighborhood of RT #1 [2634, 6642] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2634-3995 bp Feature: domain Description: DcuC Location: 2637-3969 bp Feature: domain Description: DcuC Location: 263 7-3 969 bp Feature: gene Location: 4048-4419 bp Feature: gene Location: 4641-5087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4947-5049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4947-5049 bp Feature: gene Location: 5135-5284 bp Feature: gene Location: 5611-6642 bp Feature: domain Description: Asparaginase_2 Location: 5701-6634 bp Feature: domain Description: Asparaginase_2 Location: 5701-663 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)