myRT

myRT report for GCA_002231925.1_ASM223192v1

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Seq: NLSF01000129.1 Escherichia coli strain MOD1-EC5108 MOD1-EC5108_129_length_2945_cov_127.1, whole genome shotgun sequence (2945 bp)
Overview 1 RT 1: 1-2914 bp Neighborhood of RT #1 [1, 2943] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 1-207 bp Feature: domain Description: DUF932 Location: 4-199 bp Feature: domain Description: DUF932 Location: 4-1 99 bp Feature: gene Location: 699-2477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960-1755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960-1 755 bp Feature: domain Description: Intron_maturas2 Location: 1881-2106 bp Feature: domain Description: Intron_maturas2 Location: 1 881 -21 06 bp Feature: domain Description: HNHc Note: nucleases Location: 2301-2451 bp Feature: domain Description: HNHc Note: nucleases Location: 2301 -2451 bp Feature: gene Location: 2650-2943 bp Feature: domain Description: DUF932 Location: 2656-2914 bp Feature: domain Description: DUF932 Location: 2656-291 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NLSF01000138.1 Escherichia coli strain MOD1-EC5108 MOD1-EC5108_139_length_2345_cov_114.009, whole genome shotgun sequence (2345 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 162 4-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2 068-2 2 2 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NLSF01000016.1 Escherichia coli strain MOD1-EC5108 MOD1-EC5108_16_length_96285_cov_34.7733, whole genome shotgun sequence (96285 bp)
Overview 1 RT 1: 1992-6442 bp Neighborhood of RT #1 [1992, 6444] DUF957 RVT-GII GIIM DUF4942 ghrA Feature: gene Location: 1992-2189 bp Feature: domain Description: DUF957 Location: 2004-2166 bp Feature: domain Description: DUF957 Location: 2004-2166 bp Feature: gene Location: 2193-2477 bp Feature: gene Location: 2705-4093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3035-3653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 03 5-3 653 bp Feature: domain Description: GIIM Note: maturase Location: 3701-3932 bp Feature: domain Description: GIIM Note: maturase Location: 3 701-3 93 2 bp Feature: gene Location: 4193-5035 bp Feature: domain Description: DUF4942 Location: 4457-5018 bp Feature: domain Description: DUF4942 Location: 4457-5018 bp Feature: gene Location: 5506-6444 bp Feature: domain Description: ghrA Location: 5509-6442 bp Feature: domain Description: ghrA Location: 5509-6442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF957, RVT-GII, GIIM (pfam08388), DUF4942 (pfam13708), ghrA (PRK15469)

Seq: NLSF01000018.1 Escherichia coli strain MOD1-EC5108 MOD1-EC5108_18_length_86844_cov_40.474, whole genome shotgun sequence (86844 bp)
Overview 1 RT 1: 265-4231 bp Neighborhood of RT #1 [265, 4428] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C HTH_23 Feature: gene Location: 265-615 bp Feature: domain Description: TnpB_IS66 Location: 292-583 bp Feature: domain Description: TnpB_IS66 Location: 292-583 bp Feature: gene Location: 688-2115 bp Feature: domain Description: LZ_Tnp_IS66 Location: 826-1036 bp Feature: domain Description: LZ_Tnp_IS66 Location: 826-1036 bp Feature: domain Description: zf-IS66 Location: 1060-1192 bp Feature: domain Description: zf-IS66 Location: 1060-1192 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1237-2074 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1237-2074 bp Feature: gene Location: 2577-3809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781-3432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781-34 32 bp Feature: domain Description: GIIM Note: maturase Location: 3510-3732 bp Feature: domain Description: GIIM Note: maturase Location: 3510-3732 bp Feature: gene Location: 3925-4071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3937-4048 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3937-4 04 8 bp Feature: gene Location: 4075-4428 bp Feature: domain Description: HTH_23 Location: 4147-4231 bp Feature: domain Description: HTH_23 Location: 4 14 7-4 231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), HTH_23 (pfam13384), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)