myRT

myRT report for GCA_002231995.1_ASM223199v1

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Seq: NLFO01000023.1 Escherichia coli strain MOD1-EC5754 MOD1-EC5754_23_length_91191_cov_120.264, whole genome shotgun sequence (91191 bp)
Overview 1 RT 1: 49289-53171 bp Neighborhood of RT #1 [49289, 53176] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49289-49747 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: gene Location: 49854-50450 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: gene Location: 50496-51455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631 -51 1 80 bp Feature: gene Location: 51753-52409 bp Feature: domain Description: pyrE Location: 51771-52404 bp Feature: domain Description: pyrE Location: 51 771 -52404 bp Feature: gene Location: 52460-53176 bp Feature: domain Description: rph Location: 52463-53171 bp Feature: domain Description: rph Location: 52463-531 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NLFO01000050.1 Escherichia coli strain MOD1-EC5754 MOD1-EC5754_50_length_25717_cov_99.085, whole genome shotgun sequence (25717 bp)
Overview 1 RT 1: 401-2948 bp Neighborhood of RT #1 [401, 2950] RVT-UG11 SmpB PRK10724 Feature: gene Location: 401-1174 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 536-989 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 536-989 bp Feature: gene Location: 1860-2342 bp Feature: domain Description: SmpB Location: 1890-2337 bp Feature: domain Description: SmpB Location: 1890-2 337 bp Feature: gene Location: 2474-2950 bp Feature: domain Description: PRK10724 Location: 2480-2948 bp Feature: domain Description: PRK1072 4 Location: 2 480-2 948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NLFO01000057.1 Escherichia coli strain MOD1-EC5754 MOD1-EC5754_57_length_17977_cov_43.9327, whole genome shotgun sequence (17977 bp)
Overview 1 RT 1: 2355-4996 bp Neighborhood of RT #1 [2355, 4996] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2355-2612 bp Feature: gene Location: 2669-2803 bp Feature: gene Location: 2828-4528 bp Feature: domain Description: RVT_N Location: 2882-3125 bp Feature: domain Description: RVT_N Location: 2882-3 125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3170-3806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 170-3 806 bp Feature: domain Description: GIIM Note: maturase Location: 3857-4091 bp Feature: domain Description: GIIM Note: maturase Location: 3 857-4091 bp Feature: domain Description: HNHc Note: nucleases Location: 4322-4472 bp Feature: domain Description: HNHc Note: nucleases Location: 43 22-4472 bp Feature: gene Location: 4653-4817 bp Feature: gene Location: 4844-4996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NLFO01000063.1 Escherichia coli strain MOD1-EC5754 MOD1-EC5754_63_length_11510_cov_75.7456, whole genome shotgun sequence (11510 bp)
Overview 1 RT 1: 1275-3854 bp Neighborhood of RT #1 [1275, 3859] InsE RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 1275-1694 bp Feature: domain Description: InsE Location: 1290-1674 bp Feature: domain Description: InsE Location: 1290-1674 bp Feature: gene Location: 1549-1965 bp Feature: gene Location: 2027-2950 bp Feature: domain Description: RVT_N Location: 2075-2318 bp Feature: domain Description: RVT_N Location: 2075-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2363-2933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2363-2933 bp Feature: gene Location: 2977-3384 bp Feature: gene Location: 3548-3859 bp Feature: domain Description: TnpB_IS66 Location: 3575-3854 bp Feature: domain Description: TnpB_IS66 Location: 3575-3854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717)

Seq: NLFO01000064.1 Escherichia coli strain MOD1-EC5754 MOD1-EC5754_64_length_11104_cov_61.4803, whole genome shotgun sequence (11104 bp)
Overview 1 RT 1: 114-2344 bp Neighborhood of RT #1 [114, 2344] RVT-GII GIIM PHA02517 Feature: gene Location: 114-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-942 bp Feature: domain Description: GIIM Note: maturase Location: 1017-1215 bp Feature: domain Description: GIIM Note: maturase Location: 1017-1215 bp Feature: gene Location: 1577-2023 bp Feature: domain Description: PHA02517 Location: 1580-2021 bp Feature: domain Description: PHA025 17 Location: 15 80-2021 bp Feature: gene Location: 2081-2344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)