myRT

myRT report for GCA_002232055.1_ASM223205v1

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Seq: NLGP01000046.1 Escherichia coli strain MOD1-EC5726 MOD1-EC5726_46_length_39271_cov_26.2907, whole genome shotgun sequence (39271 bp)
Overview 1 RT 1: 20539-26298 bp Neighborhood of RT #1 [20539, 26363] HsdM PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 20539-22962 bp Feature: domain Description: HsdM Location: 20560-22504 bp Feature: domain Description: HsdM Location: 20560-22504 bp Feature: gene Location: 23221-23604 bp Feature: domain Description: PHA02517 Location: 23224-23599 bp Feature: domain Description: PHA0251 7 Location: 23224-23599 bp Feature: gene Location: 23769-25292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24042-24774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24042-24774 bp Feature: domain Description: GIIM Note: maturase Location: 24849-25047 bp Feature: domain Description: GIIM Note: maturase Location: 24849-25047 bp Feature: gene Location: 25246-25671 bp Feature: gene Location: 25884-26363 bp Feature: domain Description: PHA02517 Location: 25944-26298 bp Feature: domain Description: PHA0251 7 Location: 25944-26298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NLGP01000007.1 Escherichia coli strain MOD1-EC5726 MOD1-EC5726_7_length_167254_cov_21.5084, whole genome shotgun sequence (167254 bp)
Overview 1 RT 1: 47182-53693 bp Neighborhood of RT #1 [47182, 53818] HTH_36 AAA_21 RVT-Retrons INT_Rci_Hp1_C INT_Rci_Hp1_C Feature: gene Location: 47182-47715 bp Feature: domain Description: HTH_36 Location: 47368-47524 bp Feature: domain Description: HTH_36 Location: 47368-4752 4 bp Feature: gene Location: 48175-50292 bp Feature: domain Description: AAA_21 Location: 48250-49159 bp Feature: domain Description: AAA_2 1 Location: 482 50-49159 bp Feature: gene Location: 50459-51562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51161 bp Feature: gene Location: 51771-52349 bp Feature: gene Location: 52361-53818 bp Feature: domain Description: INT_Rci_Hp1_C Location: 52739-52937 bp Feature: domain Description: INT_Rci_Hp1_C Location: 52 739-52 937 bp Feature: domain Description: INT_Rci_Hp1_C Location: 53222-53693 bp Feature: domain Description: INT_Rci_Hp1_C Location: 532 2 2 -53693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), AAA_21 (pfam13304), RVT-Retrons, INT_Rci_Hp1_C (cd00796)