myRT

myRT report for GCA_002232115.1_ASM223211v1

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Seq: NLUK01000040.1 Escherichia coli strain MOD1-EC5028 MOD1-EC5028_40_length_44738_cov_59.4399, whole genome shotgun sequence (44738 bp)
Overview 1 RT 1: 34180-38192 bp Neighborhood of RT #1 [34180, 38194] DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 34180-34722 bp Feature: domain Description: DUF1281 Location: 34189-34417 bp Feature: domain Description: DUF1 281 Location: 341 89-3441 7 bp Feature: domain Description: DUF1281_C Location: 34423-34651 bp Feature: domain Description: DUF1 281 _C Location: 34423-34651 bp Feature: gene Location: 34726-35031 bp Feature: gene Location: 35261-36961 bp Feature: RT Description: RVT_N Location: 35315-35558 bp Feature: RT Description: RVT_N Location: 3531 5-35558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35603-36239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35603-36239 bp Feature: domain Description: GIIM Note: maturase Location: 36290-36524 bp Feature: domain Description: GIIM Note: maturase Location: 36290-36524 bp Feature: domain Description: HNHc Note: nucleases Location: 36755-36905 bp Feature: domain Description: HNHc Note: nucleases Location: 36755-36905 bp Feature: gene Location: 36998-37126 bp Feature: gene Location: 37448-38194 bp Feature: domain Description: PRK13699 Location: 37583-38192 bp Feature: domain Description: PRK1 3699 Location: 37583-381 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: NLUK01000069.1 Escherichia coli strain MOD1-EC5028 MOD1-EC5028_69_length_11107_cov_24.6816, whole genome shotgun sequence (11107 bp)
Overview 1 RT 1: 1818-4411 bp Neighborhood of RT #1 [1818, 4411] CdiI_3 RVT-GII RVT-GII GIIM Feature: gene Location: 1818-2204 bp Feature: domain Description: CdiI_3 Location: 1842-2118 bp Feature: domain Description: CdiI_3 Location: 1842 -2 118 bp Feature: gene Location: 2350-2544 bp Feature: gene Location: 2652-3134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2973-3060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 973-3060 bp Feature: gene Location: 3173-3943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3176-3590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3176-3590 bp Feature: domain Description: GIIM Note: maturase Location: 3641-3806 bp Feature: domain Description: GIIM Note: maturase Location: 3641-3806 bp Feature: gene Location: 3995-4123 bp Feature: gene Location: 4193-4411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388)

Seq: NLUK01000070.1 Escherichia coli strain MOD1-EC5028 MOD1-EC5028_70_length_8654_cov_21.7581, whole genome shotgun sequence (8654 bp)
Overview 1 RT 1: 725-4484 bp Neighborhood of RT #1 [725, 4549] N6_Mtase RVT-GII GIIM PRK09940 Feature: gene Location: 725-1411 bp Feature: domain Description: N6_Mtase Location: 1028-1325 bp Feature: domain Description: N6_Mtase Location: 1028-13 25 bp Feature: gene Location: 1425-1805 bp Feature: gene Location: 1876-3228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2197-2815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2197-2815 bp Feature: domain Description: GIIM Note: maturase Location: 2863-3094 bp Feature: domain Description: GIIM Note: maturase Location: 2863 -3 094 bp Feature: gene Location: 3507-3650 bp Feature: gene Location: 3851-4549 bp Feature: domain Description: PRK09940 Location: 3857-4484 bp Feature: domain Description: PRK09940 Location: 3 857-4484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09940 (transcriptional regulator YdeO; Provisional), N6_Mtase (pfam02384)

Seq: NLUK01000099.1 Escherichia coli strain MOD1-EC5028 MOD1-EC5028_99_length_1933_cov_101.6, whole genome shotgun sequence (1933 bp)
Overview 1 RT 1: 105-1893 bp Neighborhood of RT #1 [105, 1893] RVT-GII GIIM Feature: gene Location: 105-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 53-114 0 bp Feature: domain Description: GIIM Note: maturase Location: 1257-1425 bp Feature: domain Description: GIIM Note: maturase Location: 1257-14 25 bp Feature: gene Location: 1327-1893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)