myRT

myRT report for GCA_002232155.1_ASM223215v1

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Seq: NLSD01000105.1 Escherichia coli strain MOD1-EC5111 MOD1-EC5111_105_length_2363_cov_190.195, whole genome shotgun sequence (2363 bp)
Overview 1 RT 1: 83-2142 bp Neighborhood of RT #1 [83, 2142] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1762 bp Feature: domain Description: RVT_N Location: 134-377 bp Feature: domain Description: RVT_N Location: 1 34-377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1 064 bp Feature: domain Description: GIIM Note: maturase Location: 1118-1349 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 8-1 349 bp Feature: domain Description: HNHc Note: nucleases Location: 1562-1724 bp Feature: domain Description: HNHc Note: nucleases Location: 1 562-1 724 bp Feature: gene Location: 1765-2142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NLSD01000109.1 Escherichia coli strain MOD1-EC5111 MOD1-EC5111_109_length_2020_cov_238.824, whole genome shotgun sequence (2020 bp)
Overview 1 RT 1: 109-1950 bp Neighborhood of RT #1 [109, 1950] RVT-GII GIIM Feature: gene Location: 109-1446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 -1045 bp Feature: domain Description: GIIM Note: maturase Location: 1117-1339 bp Feature: domain Description: GIIM Note: maturase Location: 1117-1339 bp Feature: gene Location: 1657-1950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NLSD01000001.1 Escherichia coli strain MOD1-EC5111 MOD1-EC5111_1_length_356114_cov_51.8452, whole genome shotgun sequence (356114 bp)
Overview 1 RT 1: 115889-124352 bp Neighborhood of RT #1 [115889, 124352] LprI RVT-UG7 FRG SR_Res_par HTH_38 RVT-Retrons XRE Feature: gene Location: 115889-116719 bp Feature: domain Description: LprI Location: 116510-116705 bp Feature: domain Description: LprI Location: 116510-116705 bp Feature: gene Location: 116724-117056 bp Feature: gene Location: 117469-118983 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 117841-118264 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 117841-118264 bp Feature: gene Location: 119145-119969 bp Feature: domain Description: FRG Location: 119253-119547 bp Feature: domain Description: FRG Location: 119253 -119547 bp Feature: gene Location: 120289-120900 bp Feature: domain Description: SR_Res_par Location: 120304-120736 bp Feature: domain Description: SR_Res_par Location: 1203 04-12073 6 bp Feature: domain Description: HTH_38 Location: 120799-120892 bp Feature: domain Description: HTH_3 8 Location: 120799-120892 bp Feature: gene Location: 121429-122826 bp Feature: gene Location: 122923-123681 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122929-123442 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122929-123 442 bp Feature: gene Location: 123863-124159 bp Feature: domain Description: XRE Location: 123872-124055 bp Feature: domain Description: XRE Location: 123 872-124055 bp Feature: gene Location: 124197-124352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LprI (pfam07007), RVT-UG7, FRG (smart00901), SR_Res_par (cd03767), HTH_38 (pfam13936), RVT-Retrons, XRE (COG1476)