myRT

myRT report for GCA_002232215.1_ASM223221v1

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Seq: NLSC01000018.1 Escherichia coli strain MOD1-EC5112 MOD1-EC5112_18_length_83447_cov_47.8476, whole genome shotgun sequence (83447 bp)
Overview 1 RT 1: 34051-37933 bp Neighborhood of RT #1 [34051, 37938] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 34051-34767 bp Feature: domain Description: rph Location: 34054-34762 bp Feature: domain Description: rph Location: 34054-34762 bp Feature: gene Location: 34818-35474 bp Feature: domain Description: pyrE Location: 34836-35469 bp Feature: domain Description: pyrE Location: 34836-35469 bp Feature: gene Location: 35772-36731 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35907-36456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35907-36456 bp Feature: gene Location: 36777-37373 bp Feature: domain Description: slmA Location: 36783-37359 bp Feature: domain Description: slmA Location: 36783-37359 bp Feature: gene Location: 37480-37938 bp Feature: domain Description: dut Location: 37486-37933 bp Feature: domain Description: dut Location: 37486-37933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NLSC01000008.1 Escherichia coli strain MOD1-EC5112 MOD1-EC5112_8_length_189030_cov_48.3013, whole genome shotgun sequence (189030 bp)
Overview 1 RT 1: 17626-21714 bp Neighborhood of RT #1 [17626, 21714] YjeJ DUF4156 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 17626-18495 bp Feature: domain Description: YjeJ Location: 17629-18475 bp Feature: domain Description: YjeJ Location: 1762 9-18475 bp Feature: gene Location: 18688-19041 bp Feature: domain Description: DUF4156 Location: 18757-19033 bp Feature: domain Description: DUF4156 Location: 18757-19033 bp Feature: gene Location: 19300-20967 bp Feature: RT Description: RVT_N Location: 19363-19597 bp Feature: RT Description: RVT_N Location: 19363-19597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19651-20296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19651-2 02 96 bp Feature: domain Description: GIIM Note: maturase Location: 20350-20581 bp Feature: domain Description: GIIM Note: maturase Location: 2 0350-2 0581 bp Feature: domain Description: HNHc Note: nucleases Location: 20791-20953 bp Feature: domain Description: HNHc Note: nucleases Location: 2 0791-2 0953 bp Feature: gene Location: 21134-21340 bp Feature: gene Location: 21397-21714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjeJ (pfam15922), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)