myRT

myRT report for GCA_002232375.1_ASM223237v1

Download annotations/find similar RTs

Seq: NLSG01000012.1 Escherichia coli strain MOD1-EC5107 MOD1-EC5107_12_length_95711_cov_48.6762, whole genome shotgun sequence (95711 bp)
Overview 1 RT 1: 1105-5555 bp Neighborhood of RT #1 [1105, 5557] DUF957 RVT-GII GIIM DUF4942 ghrA Feature: gene Location: 1105-1302 bp Feature: domain Description: DUF957 Location: 1117-1279 bp Feature: domain Description: DUF957 Location: 1 1 1 7-1 279 bp Feature: gene Location: 1306-1590 bp Feature: gene Location: 1818-3206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2148-2766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 48-2766 bp Feature: domain Description: GIIM Note: maturase Location: 2814-3045 bp Feature: domain Description: GIIM Note: maturase Location: 281 4-3045 bp Feature: gene Location: 3306-4148 bp Feature: domain Description: DUF4942 Location: 3570-4131 bp Feature: domain Description: DUF4942 Location: 3570-41 31 bp Feature: gene Location: 4619-5557 bp Feature: domain Description: ghrA Location: 4622-5555 bp Feature: domain Description: ghrA Location: 4622-5555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF957, RVT-GII, GIIM (pfam08388), DUF4942 (pfam13708), ghrA (PRK15469)

Seq: NLSG01000023.1 Escherichia coli strain MOD1-EC5107 MOD1-EC5107_23_length_69902_cov_54.3871, whole genome shotgun sequence (69900 bp)
Overview 1 RT 1: 3-4808 bp Neighborhood of RT #1 [3, 4858] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM HTH_23 DUF4007 Feature: gene Location: 3-1382 bp Feature: domain Description: LZ_Tnp_IS66 Location: 93-303 bp Feature: domain Description: LZ_Tnp_IS66 Location: 93-303 bp Feature: domain Description: zf-IS66 Location: 327-459 bp Feature: domain Description: zf-IS66 Location: 32 7-459 bp Feature: domain Description: DDE_Tnp_IS66 Location: 504-1341 bp Feature: domain Description: DDE_Tnp_IS66 Location: 504-1341 bp Feature: gene Location: 1844-3076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2048-2699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 048-2 699 bp Feature: domain Description: GIIM Note: maturase Location: 2777-2999 bp Feature: domain Description: GIIM Note: maturase Location: 2 777-2 999 bp Feature: gene Location: 3342-3695 bp Feature: domain Description: HTH_23 Location: 3414-3498 bp Feature: domain Description: HTH_2 3 Location: 3414-3498 bp Feature: gene Location: 3908-4858 bp Feature: domain Description: DUF4007 Location: 3950-4808 bp Feature: domain Description: DUF4007 Location: 3950-4808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), DUF4007 (pfam13182)

Seq: NLSG01000251.1 Escherichia coli strain MOD1-EC5107 MOD1-EC5107_289_length_2791_cov_171.259, whole genome shotgun sequence (2791 bp)
Overview 1 RT 1: 1-2790 bp Neighborhood of RT #1 [1, 2790] DUF932 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-207 bp Feature: domain Description: DUF932 Location: 4-199 bp Feature: domain Description: DUF93 2 Location: 4-199 bp Feature: gene Location: 699-2477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960-1755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960-1755 bp Feature: domain Description: Intron_maturas2 Location: 1881-2106 bp Feature: domain Description: Intron_maturas2 Location: 1881-2106 bp Feature: domain Description: HNHc Note: nucleases Location: 2301-2451 bp Feature: domain Description: HNHc Note: nucleases Location: 23 01-2451 bp Feature: gene Location: 2650-2790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NLSG01000271.1 Escherichia coli strain MOD1-EC5107 MOD1-EC5107_318_length_2345_cov_158.725, whole genome shotgun sequence (2345 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 64 3-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624 -1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NLSG01000272.1 Escherichia coli strain MOD1-EC5107 MOD1-EC5107_319_length_2336_cov_25.6181, whole genome shotgun sequence (2336 bp)
Overview 1 RT 1: 126-1880 bp Neighborhood of RT #1 [126, 1880] RVT-GII GIIM Feature: gene Location: 126-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-987 bp Feature: domain Description: GIIM Note: maturase Location: 1068-1290 bp Feature: domain Description: GIIM Note: maturase Location: 1068-1290 bp Feature: gene Location: 1400-1687 bp Feature: gene Location: 1740-1880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)