myRT

myRT report for GCA_002232535.1_ASM223253v1

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Seq: NLSW01000001.1 Escherichia coli strain MOD1-EC5091 MOD1-EC5091_1_length_263572_cov_50.473, whole genome shotgun sequence (263572 bp)
Overview 1 RT 1: 3-4668 bp Neighborhood of RT #1 [3, 4670] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 3-197 bp Feature: domain Description: Caudo_TAP Location: 54-186 bp Feature: domain Description: Caudo_TAP Location: 54-1 86 bp Feature: gene Location: 642-2246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 933-1524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 933-1 524 bp Feature: domain Description: TIR_2 Location: 1851-2184 bp Feature: domain Description: TIR_2 Location: 1 851 -21 84 bp Feature: gene Location: 2604-2864 bp Feature: domain Description: PRK10597 Location: 2607-2847 bp Feature: domain Description: PRK1 0597 Location: 2607-2847 bp Feature: gene Location: 3084-4670 bp Feature: domain Description: prfC Location: 3102-4668 bp Feature: domain Description: prfC Location: 31 02-4668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676)

Seq: NLSW01000039.1 Escherichia coli strain MOD1-EC5091 MOD1-EC5091_39_length_36993_cov_37.5265, whole genome shotgun sequence (36993 bp)
Overview 1 RT 1: 1278-4980 bp Neighborhood of RT #1 [1278, 5090] InsE PHA02517 RVT-GII GIIM PHA02517 Ogr_Delta Feature: gene Location: 1278-1580 bp Feature: domain Description: InsE Location: 1287-1569 bp Feature: domain Description: InsE Location: 12 87-1569 bp Feature: gene Location: 1607-2032 bp Feature: domain Description: PHA02517 Location: 1631-1967 bp Feature: domain Description: PHA02 517 Location: 1631-1967 bp Feature: gene Location: 2624-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 897-362 9 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: gene Location: 4312-4716 bp Feature: domain Description: PHA02517 Location: 4315-4705 bp Feature: domain Description: PHA02 517 Location: 4315-4705 bp Feature: gene Location: 4830-5090 bp Feature: domain Description: Ogr_Delta Location: 4839-4980 bp Feature: domain Description: Ogr_Delta Location: 4839-4980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Ogr_Delta (pfam04606)

Seq: NLSW01000059.1 Escherichia coli strain MOD1-EC5091 MOD1-EC5091_59_length_17818_cov_55.5309, whole genome shotgun sequence (17818 bp)
Overview 1 RT 1: 7019-10005 bp Neighborhood of RT #1 [7019, 10005] RVT-GII GIIM RVT-GII Feature: gene Location: 7019-7204 bp Feature: gene Location: 7377-7547 bp Feature: gene Location: 7710-8363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7713-8121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7713 -8121 bp Feature: domain Description: GIIM Note: maturase Location: 8169-8361 bp Feature: domain Description: GIIM Note: maturase Location: 8169-83 61 bp Feature: gene Location: 8336-8770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8528-8744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8528-8744 bp Feature: gene Location: 8939-9136 bp Feature: gene Location: 9679-10005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)