myRT

myRT report for GCA_002232655.1_ASM223265v1

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Seq: NLSV01000017.1 Escherichia coli strain MOD1-EC5092 MOD1-EC5092_17_length_102946_cov_41.7235, whole genome shotgun sequence (102946 bp)
Overview 1 RT 1: 539-4576 bp Neighborhood of RT #1 [539, 4578] RVT-Retrons COG3943 PRK15011 Feature: gene Location: 539-673 bp Feature: gene Location: 685-1635 bp Feature: gene Location: 1622-2572 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1721-2312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 721 -231 2 bp Feature: gene Location: 2866-3012 bp Feature: domain Description: COG3943 Location: 2869-2968 bp Feature: domain Description: COG3943 Location: 2869-2968 bp Feature: gene Location: 3394-4578 bp Feature: domain Description: PRK15011 Location: 3403-4576 bp Feature: domain Description: PRK1 501 1 Location: 3403-4576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)

Seq: NLSV01000043.1 Escherichia coli strain MOD1-EC5092 MOD1-EC5092_43_length_35380_cov_39.524, whole genome shotgun sequence (35380 bp)
Overview 1 RT 1: 7567-11927 bp Neighborhood of RT #1 [7567, 11929] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 7567-8667 bp Feature: domain Description: D Location: 7573-8656 bp Feature: domain Description: D Location: 7573-8656 bp Feature: gene Location: 8758-8976 bp Feature: domain Description: PRK09678 Location: 8761-8959 bp Feature: domain Description: PRK09678 Location: 8761-8959 bp Feature: gene Location: 9380-10153 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 9515-9968 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 9515-9968 bp Feature: gene Location: 10839-11321 bp Feature: domain Description: SmpB Location: 10869-11316 bp Feature: domain Description: SmpB Location: 10869-11316 bp Feature: gene Location: 11453-11929 bp Feature: domain Description: PRK10724 Location: 11459-11927 bp Feature: domain Description: PRK1072 4 Location: 11459-1192 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)