myRT

myRT report for GCA_002232855.1_ASM223285v1

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Seq: NLUW01000099.1 Escherichia coli strain MOD1-EC5002 MOD1-EC5002_100_length_2433_cov_75.233, whole genome shotgun sequence (2433 bp)
Overview 1 RT 1: 1-2086 bp Neighborhood of RT #1 [1, 2331] PHA02517 RVT-GII GIIM Feature: gene Location: 1-216 bp Feature: domain Description: PHA02517 Location: 4-151 bp Feature: domain Description: PHA0251 7 Location: 4-1 51 bp Feature: gene Location: 808-2331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1081-1813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 081 -1 81 3 bp Feature: domain Description: GIIM Note: maturase Location: 1888-2086 bp Feature: domain Description: GIIM Note: maturase Location: 1 888-2086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NLUW01000016.1 Escherichia coli strain MOD1-EC5002 MOD1-EC5002_16_length_111444_cov_21.8433, whole genome shotgun sequence (111444 bp)
Overview 1 RT 1: 22208-28451 bp Neighborhood of RT #1 [22208, 28588] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22208-22474 bp Feature: domain Description: Phage_integrase Location: 22274-22370 bp Feature: domain Description: Phage_integrase Location: 2 2 2 74-2 2 370 bp Feature: gene Location: 22557-23027 bp Feature: gene Location: 23374-26583 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24391 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3902 -2 4391 bp Feature: domain Description: nitrilase Location: 25897-26494 bp Feature: domain Description: nitrilase Location: 2 5897-2 6494 bp Feature: gene Location: 26878-27681 bp Feature: domain Description: AbiEi_3_N Location: 26911-27172 bp Feature: domain Description: AbiEi_3_N Location: 2 6911-2 7172 bp Feature: domain Description: AbiEi_3 Location: 27184-27640 bp Feature: domain Description: AbiEi_3 Location: 2 7184-2 7640 bp Feature: gene Location: 27668-28588 bp Feature: domain Description: AbiEii Location: 27710-28451 bp Feature: domain Description: AbiEii Location: 2 7710-2 8451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NLUW01000030.1 Escherichia coli strain MOD1-EC5002 MOD1-EC5002_30_length_52970_cov_23.6296, whole genome shotgun sequence (52970 bp)
Overview 1 RT 1: 24470-27525 bp Neighborhood of RT #1 [24470, 27525] RVT-GII RVT-GII GIIM Feature: gene Location: 24470-25375 bp Feature: gene Location: 25633-25830 bp Feature: gene Location: 25861-26400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26191-26269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26191-26269 bp Feature: gene Location: 26428-26949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26434-26716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2643 4-26716 bp Feature: domain Description: GIIM Note: maturase Location: 26764-26944 bp Feature: domain Description: GIIM Note: maturase Location: 26764-26944 bp Feature: gene Location: 27048-27227 bp Feature: gene Location: 27337-27525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)