myRT

myRT report for GCA_002232895.1_ASM223289v1

Download annotations/find similar RTs

Seq: NLTK01000039.1 Escherichia coli strain MOD1-EC5074 MOD1-EC5074_39_length_21511_cov_47.7371, whole genome shotgun sequence (21511 bp)
Overview 1 RT 1: 1167-5282 bp Neighborhood of RT #1 [1167, 5282] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 1167-1319 bp Feature: domain Description: rve_2 Location: 1197-1305 bp Feature: domain Description: rve_2 Location: 1 1 97-1 305 bp Feature: gene Location: 1592-1897 bp Feature: gene Location: 1940-3328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2270-2888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2270-2888 bp Feature: domain Description: GIIM Note: maturase Location: 2936-3167 bp Feature: domain Description: GIIM Note: maturase Location: 2936-31 67 bp Feature: gene Location: 3715-5106 bp Feature: domain Description: InsG Location: 3718-4639 bp Feature: domain Description: InsG Location: 371 8-4639 bp Feature: domain Description: Transposase_20 Location: 4762-5008 bp Feature: domain Description: Transposase_20 Location: 4762-5008 bp Feature: gene Location: 5115-5282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: NLTK01000047.1 Escherichia coli strain MOD1-EC5074 MOD1-EC5074_47_length_13213_cov_59.343, whole genome shotgun sequence (13213 bp)
Overview 1 RT 1: 5327-8407 bp Neighborhood of RT #1 [5327, 8407] COG3547 COG3547 RVT-GII Feature: gene Location: 5327-5875 bp Feature: domain Description: COG3547 Location: 5339-5825 bp Feature: domain Description: COG3547 Location: 5339-582 5 bp Feature: gene Location: 5934-6329 bp Feature: domain Description: COG3547 Location: 5952-6243 bp Feature: domain Description: COG3547 Location: 5952 -62 43 bp Feature: gene Location: 6568-8025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6976-7663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6976-7663 bp Feature: gene Location: 8059-8199 bp Feature: gene Location: 8207-8407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: NLTK01000051.1 Escherichia coli strain MOD1-EC5074 MOD1-EC5074_51_length_7899_cov_55.0251, whole genome shotgun sequence (7899 bp)
Overview 1 RT 1: 107-7875 bp Neighborhood of RT #1 [107, 7898] DDE_Tnp_IS66_C GIIM RVT-GII DDE_Tnp_IS66 COG3436 HTH_23 InsE RVT-GII RVT-GII fil_hemag_20aa fil_hemag_20aa Feature: gene Location: 107-253 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 119-230 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 119-23 0 bp Feature: gene Location: 370-741 bp Feature: domain Description: GIIM Note: maturase Location: 442-664 bp Feature: domain Description: GIIM Note: maturase Location: 442-664 bp Feature: gene Location: 890-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091-1592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091-1592 bp Feature: gene Location: 2052-2441 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2157-2400 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2157-2400 bp Feature: gene Location: 2417-3493 bp Feature: domain Description: COG3436 Location: 2729-3200 bp Feature: domain Description: COG3 43 6 Location: 2729-3 200 bp Feature: gene Location: 3860-4510 bp Feature: domain Description: HTH_23 Location: 3911-4010 bp Feature: domain Description: HTH_23 Location: 3 911-4010 bp Feature: domain Description: InsE Location: 4136-4487 bp Feature: domain Description: InsE Location: 413 6-4487 bp Feature: gene Location: 4882-5085 bp Feature: gene Location: 5492-5866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5498-5669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5498-5669 bp Feature: gene Location: 5882-6694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155-6611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155-6611 bp Feature: gene Location: 7305-7898 bp Feature: domain Description: fil_hemag_20aa Location: 7311-7383 bp Feature: domain Description: fil_hemag_20aa Location: 73 11-73 83 bp Feature: domain Description: fil_hemag_20aa Location: 7794-7875 bp Feature: domain Description: fil_hemag_20aa Location: 7794-7875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase ), GIIM (pfam08388), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), fil_hemag_20aa (TIGR01731)