myRT

myRT report for GCA_002233015.1_ASM223301v1

Download annotations/find similar RTs

Seq: NLTX01000049.1 Escherichia coli strain MOD1-EC5053 MOD1-EC5053_49_length_26453_cov_46.1343, whole genome shotgun sequence (26453 bp)
Overview 1 RT 1: 21359-24709 bp Neighborhood of RT #1 [21359, 24741] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 21359-22006 bp Feature: domain Description: PinE Location: 21452-22001 bp Feature: domain Description: PinE Location: 21 452-22001 bp Feature: gene Location: 22106-22507 bp Feature: gene Location: 22716-24068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23037-23655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23037-23655 bp Feature: domain Description: GIIM Note: maturase Location: 23703-23934 bp Feature: domain Description: GIIM Note: maturase Location: 23703-23934 bp Feature: gene Location: 24139-24489 bp Feature: gene Location: 24544-24741 bp Feature: domain Description: PRK09413 Location: 24547-24709 bp Feature: domain Description: PRK0941 3 Location: 24547-24709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: NLTX01000092.1 Escherichia coli strain MOD1-EC5053 MOD1-EC5053_92_length_2272_cov_109.766, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)