myRT

myRT report for GCA_002233095.1_ASM223309v1

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Seq: NLTS01000040.1 Escherichia coli strain MOD1-EC5062 MOD1-EC5062_40_length_25832_cov_49.6066, whole genome shotgun sequence (25832 bp)
Overview 1 RT 1: 515-3062 bp Neighborhood of RT #1 [515, 3064] RVT-UG11 SmpB PRK10724 Feature: gene Location: 515-1288 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 650-1103 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 650-1 1 03 bp Feature: gene Location: 1974-2456 bp Feature: domain Description: SmpB Location: 2004-2451 bp Feature: domain Description: SmpB Location: 2004-2451 bp Feature: gene Location: 2588-3064 bp Feature: domain Description: PRK10724 Location: 2594-3062 bp Feature: domain Description: PRK1 0724 Location: 2594-3062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NLTS01000052.1 Escherichia coli strain MOD1-EC5062 MOD1-EC5062_52_length_6648_cov_67.5928, whole genome shotgun sequence (6648 bp)
Overview 1 RT 1: 188-5858 bp Neighborhood of RT #1 [188, 5860] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 PRK08026 PRK08026 Feature: gene Location: 188-1339 bp Feature: domain Description: HTH_38 Location: 197-311 bp Feature: domain Description: HTH_38 Location: 197-311 bp Feature: domain Description: Tra8 Location: 347-1328 bp Feature: domain Description: Tra8 Location: 347-132 8 bp Feature: gene Location: 1488-1898 bp Feature: domain Description: PHA02517 Location: 1494-1833 bp Feature: domain Description: PHA02 517 Location: 1494-1833 bp Feature: gene Location: 2490-4013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2763-3495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 763-3495 bp Feature: domain Description: GIIM Note: maturase Location: 3570-3768 bp Feature: domain Description: GIIM Note: maturase Location: 3570-3768 bp Feature: gene Location: 4190-4570 bp Feature: domain Description: PHA02517 Location: 4193-4562 bp Feature: domain Description: PHA02 517 Location: 4193-4562 bp Feature: gene Location: 4739-5860 bp Feature: domain Description: PRK08026 Location: 4742-5291 bp Feature: domain Description: PRK0802 6 Location: 4742 -52 91 bp Feature: domain Description: PRK08026 Location: 5375-5858 bp Feature: domain Description: PRK0802 6 Location: 5375-5858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK08026 (FliC/FljB family flagellin)