myRT

myRT report for GCA_002233295.1_ASM223329v1

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Seq: NLUU01000031.1 Escherichia coli strain MOD1-EC5004 MOD1-EC5004_31_length_59585_cov_52.857, whole genome shotgun sequence (59585 bp)
Overview 1 RT 1: 44940-48845 bp Neighborhood of RT #1 [44940, 48847] RVT-Retrons PRK09692 PRK09692 Feature: gene Location: 44940-45935 bp Feature: gene Location: 46113-46775 bp Feature: gene Location: 46765-47946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46915-47491 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4691 5-47491 bp Feature: gene Location: 48347-48637 bp Feature: domain Description: PRK09692 Location: 48353-48599 bp Feature: domain Description: PRK09692 Location: 48353-48599 bp Feature: gene Location: 48647-48847 bp Feature: domain Description: PRK09692 Location: 48656-48845 bp Feature: domain Description: PRK09692 Location: 48656-48845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: NLUU01000033.1 Escherichia coli strain MOD1-EC5004 MOD1-EC5004_33_length_54084_cov_47.0589, whole genome shotgun sequence (54084 bp)
Overview 1 RT 1: 4975-10410 bp Neighborhood of RT #1 [4975, 10415] PRK15213 FimA RVT-GII GIIM ParE_toxin Feature: gene Location: 4975-7419 bp Feature: domain Description: PRK15213 Location: 5017-7417 bp Feature: domain Description: PRK152 13 Location: 5017-7417 bp Feature: gene Location: 7434-8000 bp Feature: domain Description: FimA Location: 7521-7998 bp Feature: domain Description: FimA Location: 752 1-7998 bp Feature: gene Location: 8430-9485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8547-9108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8547-9108 bp Feature: domain Description: GIIM Note: maturase Location: 9186-9408 bp Feature: domain Description: GIIM Note: maturase Location: 9186-9408 bp Feature: gene Location: 9753-10034 bp Feature: gene Location: 10140-10415 bp Feature: domain Description: ParE_toxin Location: 10149-10410 bp Feature: domain Description: ParE_toxin Location: 10149-10410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), PRK15213 (outer membrane usher protein PefC), FimA (pfam16970), RVT-GII, GIIM (pfam08388)

Seq: NLUU01000065.1 Escherichia coli strain MOD1-EC5004 MOD1-EC5004_65_length_14983_cov_53.1784, whole genome shotgun sequence (14983 bp)
Overview 1 RT 1: 5679-9281 bp Neighborhood of RT #1 [5679, 9281] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5679-6101 bp Feature: domain Description: DUF1380 Location: 5682-5979 bp Feature: domain Description: DUF13 80 Location: 5682-5979 bp Feature: gene Location: 6186-6503 bp Feature: gene Location: 6567-8234 bp Feature: RT Description: RVT_N Location: 6615-6852 bp Feature: RT Description: RVT_N Location: 6615-6852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6903-7545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6903 -7545 bp Feature: domain Description: GIIM Note: maturase Location: 7596-7830 bp Feature: domain Description: GIIM Note: maturase Location: 7596-783 0 bp Feature: domain Description: HNHc Note: nucleases Location: 8040-8199 bp Feature: domain Description: HNHc Note: nucleases Location: 8040-8199 bp Feature: gene Location: 8514-8696 bp Feature: gene Location: 8808-9281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)