myRT

myRT report for GCA_002233375.1_ASM223337v1

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Seq: NLUH01000031.1 Escherichia coli strain MOD1-EC5032 MOD1-EC5032_31_length_43317_cov_22.2698, whole genome shotgun sequence (43317 bp)
Overview 1 RT 1: 512-3996 bp Neighborhood of RT #1 [512, 3996] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 512-664 bp Feature: gene Location: 734-1636 bp Feature: domain Description: DUF1281 Location: 803-1331 bp Feature: domain Description: DUF1 281 Location: 803-1 331 bp Feature: domain Description: DUF1281_C Location: 1337-1577 bp Feature: domain Description: DUF1 281 _C Location: 1 337-1 577 bp Feature: gene Location: 1713-3437 bp Feature: RT Description: RVT_N Location: 1770-2007 bp Feature: RT Description: RVT_N Location: 1 770-2007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058-2706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058-2706 bp Feature: domain Description: YkfC Location: 2838-2994 bp Feature: domain Description: YkfC Location: 2838-2994 bp Feature: domain Description: HNHc Note: nucleases Location: 3222-3381 bp Feature: domain Description: HNHc Note: nucleases Location: 3222-3381 bp Feature: gene Location: 3478-3618 bp Feature: gene Location: 3700-3996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: NLUH01000043.1 Escherichia coli strain MOD1-EC5032 MOD1-EC5032_43_length_13577_cov_20.6084, whole genome shotgun sequence (13577 bp)
Overview 1 RT 1: 7238-10289 bp Neighborhood of RT #1 [7238, 10414] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 7238-7657 bp Feature: domain Description: PHA02517 Location: 7241-7646 bp Feature: domain Description: PHA02 517 Location: 72 41-7646 bp Feature: gene Location: 7780-7965 bp Feature: gene Location: 8138-8950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8231-8810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 31-8810 bp Feature: gene Location: 8811-9827 bp Feature: domain Description: YkfC Location: 9507-9777 bp Feature: domain Description: YkfC Location: 9507-9777 bp Feature: gene Location: 9908-10414 bp Feature: domain Description: HlyC Location: 9929-10289 bp Feature: domain Description: HlyC Location: 992 9-102 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)

Seq: NLUH01000006.1 Escherichia coli strain MOD1-EC5032 MOD1-EC5032_6_length_211836_cov_17.4291, whole genome shotgun sequence (211836 bp)
Overview 1 RT 1: 40424-44553 bp Neighborhood of RT #1 [40424, 44582] RVT-Retrons Q P P Feature: gene Location: 40424-40948 bp Feature: gene Location: 41016-41678 bp Feature: gene Location: 41850-42827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42090-42639 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42090-4263 9 bp Feature: gene Location: 42847-43878 bp Feature: domain Description: Q Location: 42853-43873 bp Feature: domain Description: Q Location: 42853 -43 873 bp Feature: gene Location: 43875-44582 bp Feature: domain Description: P Location: 43932-44373 bp Feature: domain Description: P Location: 43 93 2-443 73 bp Feature: domain Description: P Location: 44424-44553 bp Feature: domain Description: P Location: 44424-44553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)