myRT

myRT report for GCA_002233495.1_ASM223349v1

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Seq: NLUQ01000012.1 Escherichia coli strain MOD1-EC5020 MOD1-EC5020_12_length_144727_cov_32.2747, whole genome shotgun sequence (144727 bp)
Overview 1 RT 1: 9775-13657 bp Neighborhood of RT #1 [9775, 13662] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9775-10233 bp Feature: domain Description: dut Location: 9781-10228 bp Feature: domain Description: dut Location: 9781 -1 0228 bp Feature: gene Location: 10340-10936 bp Feature: domain Description: slmA Location: 10346-10922 bp Feature: domain Description: slmA Location: 1 0346-1 0922 bp Feature: gene Location: 10982-11941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11117-11666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 1 7-1 1 666 bp Feature: gene Location: 12239-12895 bp Feature: domain Description: pyrE Location: 12257-12890 bp Feature: domain Description: pyrE Location: 1 2257-1 2890 bp Feature: gene Location: 12946-13662 bp Feature: domain Description: rph Location: 12949-13657 bp Feature: domain Description: rph Location: 1 2949-1 3657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: NLUQ01000057.1 Escherichia coli strain MOD1-EC5020 MOD1-EC5020_57_length_16691_cov_17.4803, whole genome shotgun sequence (16691 bp)
Overview 1 RT 1: 13452-16187 bp Neighborhood of RT #1 [13452, 16432] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM Feature: gene Location: 13452-13970 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13470-13815 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13470-13815 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13836-13947 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13836-13947 bp Feature: gene Location: 14105-14317 bp Feature: domain Description: PHA02517 Location: 14108-14252 bp Feature: domain Description: PHA02 517 Location: 14108-142 52 bp Feature: gene Location: 14909-16432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15182-15914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15182 -15914 bp Feature: domain Description: GIIM Note: maturase Location: 15989-16187 bp Feature: domain Description: GIIM Note: maturase Location: 15989-16187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)