myRT

myRT report for GCA_002233675.1_ASM223367v1

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Seq: NMUQ01000003.1 Paenibacillus herberti strain R33 R33_Scf_3, whole genome shotgun sequence (723056 bp)
Overview 1 RT 1: 36030-42870 bp Neighborhood of RT #1 [36030, 42870] zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DUF2220 Feature: gene Location: 36030-36377 bp Feature: gene Location: 36769-38283 bp Feature: domain Description: zf-IS66 Location: 37168-37294 bp Feature: domain Description: zf-IS66 Location: 371 68-37294 bp Feature: domain Description: DDE_Tnp_IS66 Location: 37339-38179 bp Feature: domain Description: DDE_Tnp_IS66 Location: 37339-381 79 bp Feature: gene Location: 38809-40119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39064-39754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39064-39754 bp Feature: domain Description: GIIM Note: maturase Location: 39814-40033 bp Feature: domain Description: GIIM Note: maturase Location: 3981 4-40033 bp Feature: gene Location: 40509-41300 bp Feature: domain Description: DUF2220 Location: 40806-41253 bp Feature: domain Description: DUF2220 Location: 40806-41 253 bp Feature: gene Location: 41302-42870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DUF2220 (pfam09983)

Seq: NMUQ01000001.1 Paenibacillus herberti strain R33 R33_Scf_1, whole genome shotgun sequence (2773355 bp)
Overview 1 RT 1: 1642475-1647367 bp 2 RT 2: 2410475-2413543 bp Neighborhood of RT #1 [1642475, 1647528] DUF4096 RVT-GII DUF4372 DDE_Tnp_1 Neighborhood of RT #2 [2410475, 2413543] RVT-CRISPR-like COG3415 DDE_3 Feature: gene Location: 1642475-1642824 bp Feature: domain Description: DUF4096 Location: 1642499-1642745 bp Feature: domain Description: DUF4096 Location: 1642 499-1642 745 bp Feature: gene Location: 1641999-1642476 bp Feature: gene Location: 1643012-1644322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1643267-1643957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16432 67-1643957 bp Feature: gene Location: 1645692-1646168 bp Feature: gene Location: 1646380-1647528 bp Feature: domain Description: DUF4372 Location: 1646407-1646608 bp Feature: domain Description: DUF4372 Location: 1646407-1646608 bp Feature: domain Description: DDE_Tnp_1 Location: 1646740-1647367 bp Feature: domain Description: DDE_Tnp_1 Location: 1646740-1647367 bp Feature: gene Location: 2410475-2410945 bp Feature: gene Location: 2410992-2411441 bp Feature: gene Location: 2411686-2411883 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2411692-2411815 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 411692 -2 411815 bp Feature: gene Location: 2412212-2413252 bp Feature: domain Description: COG3415 Location: 2412269-2412701 bp Feature: domain Description: COG3415 Location: 2 412 2 69-2 412 701 bp Feature: domain Description: DDE_3 Location: 2412749-2413163 bp Feature: domain Description: DDE_3 Location: 2 412 749-2 413163 bp Feature: gene Location: 2413292-2413543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), RVT-GII, DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), RVT-CRISPR, COG3415 (Transposase ), DDE_3 (pfam13358)

Seq: NMUQ01000002.1 Paenibacillus herberti strain R33 R33_Scf_2, whole genome shotgun sequence (1557446 bp)
Overview 1 RT 1: 897267-899244 bp Neighborhood of RT #1 [897267, 900180] HDGYP RVT-GII Feature: gene Location: 897267-898325 bp Feature: domain Description: HDGYP Location: 897663-898254 bp Feature: domain Description: HDGYP Location: 897663 -898254 bp Feature: gene Location: 898386-898691 bp Feature: gene Location: 898920-900180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899115-899244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899115-899244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDGYP (COG2206), RVT-GII