myRT

myRT report for GCA_002236805.1_ASM223680v1

Download annotations/find similar RTs

Seq: NIQA01000018.1 Pusillimonas sp. T2 scaffold18, whole genome shotgun sequence (17383 bp)
Overview 1 RT 1: 13662-17252 bp Neighborhood of RT #1 [13662, 17287] HTH_MARR COG5421 RVT-GII HTH_Tnp_1 TnpB_IS66 Feature: gene Location: 13662-14126 bp Feature: domain Description: HTH_MARR Location: 13746-14040 bp Feature: domain Description: HTH_MARR Location: 1 3746-1 4040 bp Feature: gene Location: 14352-14852 bp Feature: domain Description: COG5421 Location: 14469-14661 bp Feature: domain Description: COG5421 Location: 1 4469-1 4661 bp Feature: gene Location: 14794-16590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15502-16192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5502-1 61 92 bp Feature: gene Location: 16731-17096 bp Feature: domain Description: HTH_Tnp_1 Location: 16791-16887 bp Feature: domain Description: HTH_Tnp_1 Location: 1 6791 -1 6887 bp Feature: gene Location: 17093-17287 bp Feature: domain Description: TnpB_IS66 Location: 17123-17252 bp Feature: domain Description: TnpB_IS66 Location: 1 71 23-1 7252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_MARR (smart00347), COG5421 (Transposase ), RVT-GII, HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717)

Seq: NIQA01000002.1 Pusillimonas sp. T2 scaffold2, whole genome shotgun sequence (557179 bp)
Overview 1 RT 1: 120492-128047 bp Neighborhood of RT #1 [120492, 128079] COG0610 RVT-Retrons HsdM_N COG3177 Feature: gene Location: 120492-123614 bp Feature: domain Description: COG0610 Location: 120516-123117 bp Feature: domain Description: COG0610 Location: 12 0516-12 3117 bp Feature: gene Location: 123952-125007 bp Feature: gene Location: 125004-125936 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125115-125706 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 5115-12 5706 bp Feature: gene Location: 126438-126563 bp Feature: domain Description: HsdM_N Location: 126453-126558 bp Feature: domain Description: HsdM_N Location: 12 6453-12 6558 bp Feature: gene Location: 127015-128079 bp Feature: domain Description: COG3177 Location: 127057-128047 bp Feature: domain Description: COG3177 Location: 12 7057-12 8047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-Retrons, HsdM_N (pfam12161), COG3177 (Fic family protein )