myRT

myRT report for GCA_002238415.1_ASM223841v1

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Seq: MPMI01000042.1 Desulfurellaceae bacterium bin18 NODE_1182_length_49792_cov_6.68795_ID_2363, whole genome shotgun sequence (49792 bp)
Overview 1 RT 1: 38234-42614 bp Neighborhood of RT #1 [38234, 42664] PIN_VapC-like RVT_N RVT-GII GIIM HNHc Glyoxalase Feature: gene Location: 38234-38725 bp Feature: domain Description: PIN_VapC-like Location: 38285-38633 bp Feature: domain Description: PIN_VapC-like Location: 38285-38633 bp Feature: gene Location: 38887-39249 bp Feature: gene Location: 39483-41162 bp Feature: domain Description: RVT_N Location: 39537-39783 bp Feature: domain Description: RVT_N Location: 39537-39783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39831-40470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39831 -40470 bp Feature: domain Description: GIIM Note: maturase Location: 40551-40776 bp Feature: domain Description: GIIM Note: maturase Location: 40551 -40776 bp Feature: domain Description: HNHc Note: nucleases Location: 40974-41133 bp Feature: domain Description: HNHc Note: nucleases Location: 40974-41 1 33 bp Feature: gene Location: 41323-41529 bp Feature: gene Location: 42230-42664 bp Feature: domain Description: Glyoxalase Location: 42242-42614 bp Feature: domain Description: Glyoxalase Location: 42242-4261 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Glyoxalase (pfam00903)

Seq: MPMI01000083.1 Desulfurellaceae bacterium bin18 NODE_18479_length_1991_cov_6.15343_ID_36957, whole genome shotgun sequence (1991 bp)
Overview 1 RT 1: 1-1687 bp Neighborhood of RT #1 [1, 1770] RVT-GII GIIM Feature: gene Location: 1-369 bp Feature: gene Location: 511-1770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712-1372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712 -1372 bp Feature: domain Description: GIIM Note: maturase Location: 1453-1687 bp Feature: domain Description: GIIM Note: maturase Location: 1453-1687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MPMI01000016.1 Desulfurellaceae bacterium bin18 NODE_277_length_111604_cov_6.36644_ID_553, whole genome shotgun sequence (111604 bp)
Overview 1 RT 1: 105905-111567 bp Neighborhood of RT #1 [105905, 111602] MFS_FBT RVT-UG16 PIN_NicB-like PRK07235 Feature: gene Location: 105905-106957 bp Feature: domain Description: MFS_FBT Location: 105920-106856 bp Feature: domain Description: MFS_FBT Location: 105920-106856 bp Feature: gene Location: 107113-108600 bp Feature: gene Location: 108744-110228 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 109107-109515 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 109107-109515 bp Feature: gene Location: 110588-111211 bp Feature: domain Description: PIN_NicB-like Location: 110594-111077 bp Feature: domain Description: PIN_NicB-like Location: 110594-111077 bp Feature: gene Location: 111318-111602 bp Feature: domain Description: PRK07235 Location: 111324-111567 bp Feature: domain Description: PRK0723 5 Location: 1113 24-111567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_FBT (cd17484), RVT-UG16, PIN_NicB-like (cd18722), PRK07235 (amidase; Provisional)

Seq: MPMI01000002.1 Desulfurellaceae bacterium bin18 NODE_58_length_225052_cov_7.39621_ID_115, whole genome shotgun sequence (225052 bp)
Overview 1 RT 1: 146115-152632 bp Neighborhood of RT #1 [146115, 153015] gldA LolA_like RVT_N RVT-GII GIIM HNHc LolA_like Feature: gene Location: 146115-147230 bp Feature: domain Description: gldA Location: 146118-147213 bp Feature: domain Description: gldA Location: 14 6118-14 7213 bp Feature: gene Location: 147285-148094 bp Feature: domain Description: LolA_like Location: 147288-147711 bp Feature: domain Description: LolA_like Location: 14 7288-14 7711 bp Feature: gene Location: 148495-150174 bp Feature: domain Description: RVT_N Location: 148549-148792 bp Feature: domain Description: RVT_N Location: 14 854 9-14 8792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148843-149482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 884 3-14 94 82 bp Feature: domain Description: GIIM Note: maturase Location: 149554-149785 bp Feature: domain Description: GIIM Note: maturase Location: 14 9554 -14 9785 bp Feature: domain Description: HNHc Note: nucleases Location: 149977-150148 bp Feature: domain Description: HNHc Note: nucleases Location: 14 9977-15014 8 bp Feature: gene Location: 151041-151625 bp Feature: gene Location: 151627-153015 bp Feature: domain Description: LolA_like Location: 152080-152632 bp Feature: domain Description: LolA_like Location: 152080-152632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gldA (PRK09423), LolA_like (pfam17131), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MPMI01000003.1 Desulfurellaceae bacterium bin18 NODE_92_length_181412_cov_6.84448_ID_183, whole genome shotgun sequence (181412 bp)
Overview 1 RT 1: 99771-105857 bp Neighborhood of RT #1 [99771, 105857] cysK hydroxyacyl-CoA-like_DH_SDR_c-like RVT-UG23 RVT-UG23 Vitellogenin_N COG2159 Feature: gene Location: 99771-100700 bp Feature: domain Description: cysK Location: 99798-100686 bp Feature: domain Description: cysK Location: 99798-100686 bp Feature: gene Location: 100716-101630 bp Feature: domain Description: hydroxyacyl-CoA-like_DH_SDR_c-like Location: 100731-101478 bp Feature: domain Description: hydroxyacyl-CoA-like_DH_SDR_c-like Location: 100731-101478 bp Feature: gene Location: 101859-103763 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 102078-102213 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 102078-102213 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 102288-102777 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 102288-102777 bp Feature: domain Description: Vitellogenin_N Location: 103164-103407 bp Feature: domain Description: Vitellogenin_N Location: 103164-103407 bp Feature: gene Location: 103987-105441 bp Feature: domain Description: COG2159 Location: 104263-104866 bp Feature: domain Description: COG215 9 Location: 104263-104866 bp Feature: gene Location: 105471-105857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cysK (TIGR01139), hydroxyacyl-CoA-like_DH_SDR_c-like (cd05353), RVT-UG23, Vitellogenin_N (pfam01347), COG2159 (Predicted metal-dependent hydrolase, TIM-barrel fold )