myRT

myRT report for GCA_002238685.1_ASM223868v1

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Seq: MPMV01000006.1 Bacterium EF100-94H03 bin56 NODE_167_length_143662_cov_9.42128_ID_333, whole genome shotgun sequence (143662 bp)
Overview 1 RT 1: 163-2848 bp Neighborhood of RT #1 [163, 2934] RVT-GII GIIM COG3791 Feature: gene Location: 163-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556-1216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556-1 21 6 bp Feature: domain Description: GIIM Note: maturase Location: 1294-1498 bp Feature: domain Description: GIIM Note: maturase Location: 1 294-1 498 bp Feature: gene Location: 2204-2419 bp Feature: gene Location: 2452-2934 bp Feature: domain Description: COG3791 Location: 2473-2848 bp Feature: domain Description: COG3791 Location: 2473-2848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3791 (Uncharacterized conserved protein )

Seq: MPMV01000068.1 Bacterium EF100-94H03 bin56 NODE_4654_length_15634_cov_9.15329_ID_9307, whole genome shotgun sequence (15634 bp)
Overview 1 RT 1: 2216-6652 bp Neighborhood of RT #1 [2216, 6652] INT_RitB_C_like xerC Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM Feature: gene Location: 2216-3142 bp Feature: domain Description: INT_RitB_C_like Location: 2534-3104 bp Feature: domain Description: INT_RitB_C_like Location: 2 534-3104 bp Feature: gene Location: 3139-4695 bp Feature: domain Description: xerC Location: 3493-3619 bp Feature: domain Description: xerC Location: 3493-3619 bp Feature: domain Description: Phage_int_SAM_1 Location: 3820-4054 bp Feature: domain Description: Phage_int_SAM_1 Location: 382 0-4054 bp Feature: domain Description: INT_RitA_C_like Location: 4135-4666 bp Feature: domain Description: INT_RitA_C_like Location: 4135-4666 bp Feature: gene Location: 4921-5508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4924-5131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 4-5131 bp Feature: domain Description: GIIM Note: maturase Location: 5200-5419 bp Feature: domain Description: GIIM Note: maturase Location: 52 00-5419 bp Feature: gene Location: 5856-6302 bp Feature: gene Location: 6512-6652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), xerC (PRK01287), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388)

Seq: MPMV01000002.1 Bacterium EF100-94H03 bin56 NODE_83_length_192554_cov_9.11667_ID_165, whole genome shotgun sequence (192554 bp)
Overview 1 RT 1: 189769-192453 bp Neighborhood of RT #1 [189769, 192551] FYDLN_acid INT_P4_C RVT-GII GIIM Feature: gene Location: 189769-190008 bp Feature: domain Description: FYDLN_acid Location: 189772-189991 bp Feature: domain Description: FYDLN_acid Location: 189772-189991 bp Feature: gene Location: 190501-191487 bp Feature: domain Description: INT_P4_C Location: 190897-191431 bp Feature: domain Description: INT_P4_C Location: 190897-19143 1 bp Feature: gene Location: 191781-192551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191784-192171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191784-192171 bp Feature: domain Description: GIIM Note: maturase Location: 192255-192453 bp Feature: domain Description: GIIM Note: maturase Location: 192255-192453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FYDLN_acid (TIGR02300), INT_P4_C (cd00801), RVT-GII, GIIM (pfam08388)

Seq: MPMV01000027.1 Bacterium EF100-94H03 bin56 NODE_942_length_58263_cov_8.72107_ID_1883, whole genome shotgun sequence (58263 bp)
Overview 1 RT 1: 8641-13486 bp 2 RT 2: 37405-45494 bp Neighborhood of RT #1 [8641, 13486] HigA RVT-GII GIIM PRK11139 Neighborhood of RT #2 [37405, 45494] RVT-GII GIIM RVT-GII GIIM TPR DUF560 Feature: gene Location: 8641-8862 bp Feature: gene Location: 8795-9256 bp Feature: domain Description: HigA Location: 8879-9215 bp Feature: domain Description: HigA Location: 8879-9215 bp Feature: gene Location: 9828-11168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10128-10788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10128-10788 bp Feature: domain Description: GIIM Note: maturase Location: 10863-11070 bp Feature: domain Description: GIIM Note: maturase Location: 10863-11070 bp Feature: gene Location: 11356-12297 bp Feature: domain Description: PRK11139 Location: 11383-12259 bp Feature: domain Description: PRK11139 Location: 11383-12259 bp Feature: gene Location: 13031-13486 bp Feature: gene Location: 37405-37578 bp Feature: gene Location: 38106-39620 bp Feature: gene Location: 39901-41514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40465-41083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 04 65-4 1083 bp Feature: domain Description: GIIM Note: maturase Location: 41137-41362 bp Feature: domain Description: GIIM Note: maturase Location: 4 1137-4 1362 bp Feature: gene Location: 41775-43628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42342-42954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 234 2-4 2954 bp Feature: domain Description: GIIM Note: maturase Location: 43011-43128 bp Feature: domain Description: GIIM Note: maturase Location: 4 3011-4 3128 bp Feature: gene Location: 43660-44895 bp Feature: domain Description: TPR Location: 43675-43954 bp Feature: domain Description: TPR Location: 4 3675-4 3954 bp Feature: domain Description: DUF560 Location: 44029-44881 bp Feature: domain Description: DUF560 Location: 4 4 029-4 4 881 bp Feature: gene Location: 45204-45494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigA (COG5499), RVT-GII, GIIM (pfam08388), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), TPR (smart00028), DUF560 (pfam04575)