myRT

myRT report for GCA_002239545.1_ASM223954v1

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Seq: NLBF01000068.1 Pseudomonas aeruginosa strain Env_11 contig-60, whole genome shotgun sequence (166424 bp)
Overview 1 RT 1: 62319-70507 bp 2 RT 2: 86772-100563 bp Neighborhood of RT #1 [62319, 70515] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86772, 100577] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C RVT-Retrons HTH_ARSR Feature: gene Location: 62319-63335 bp Feature: domain Description: COG3178 Location: 62322-63321 bp Feature: domain Description: COG31 78 Location: 62322-63321 bp Feature: gene Location: 64208-64420 bp Feature: gene Location: 64608-66320 bp Feature: RT Description: RVT_N Location: 64665-64908 bp Feature: RT Description: RVT_N Location: 64665-64908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64953-65589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64953-65589 bp Feature: domain Description: YkfC Location: 65796-65949 bp Feature: domain Description: YkfC Location: 65796-65949 bp Feature: domain Description: HNH Note: nucleases Location: 66126-66264 bp Feature: domain Description: HNH Note: nucleases Location: 661 26-66264 bp Feature: gene Location: 66453-69242 bp Feature: domain Description: LptD Location: 66648-69228 bp Feature: domain Description: LptD Location: 66648-69228 bp Feature: gene Location: 69223-70515 bp Feature: domain Description: PRK10770 Location: 69313-70507 bp Feature: domain Description: PRK1 0770 Location: 6931 3-70507 bp Feature: gene Location: 86772-88625 bp Feature: domain Description: PRK05658 Location: 86784-88623 bp Feature: domain Description: PRK05658 Location: 86784-88623 bp Feature: gene Location: 88732-92469 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88840-89497 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88840-89497 bp Feature: domain Description: PRK09776 Location: 89710-90181 bp Feature: domain Description: PRK09776 Location: 8971 0-901 81 bp Feature: domain Description: PAS Location: 90226-90763 bp Feature: domain Description: PAS Location: 90226-90763 bp Feature: domain Description: PRK10060 Location: 90772-92419 bp Feature: domain Description: PRK1 0060 Location: 90772-9241 9 bp Feature: gene Location: 93550-95235 bp Feature: RT Description: RVT_N Location: 93607-93847 bp Feature: RT Description: RVT_N Location: 93607-93847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93895-94531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93895-94531 bp Feature: domain Description: GIIM Note: maturase Location: 94585-94816 bp Feature: domain Description: GIIM Note: maturase Location: 94585-9481 6 bp Feature: domain Description: HNH Note: nucleases Location: 95068-95206 bp Feature: domain Description: HNH Note: nucleases Location: 95068-95206 bp Feature: gene Location: 95538-96610 bp Feature: domain Description: INT_Rci_Hp1_C Location: 96048-96309 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 96048-96309 bp Feature: gene Location: 97354-99090 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97528-98125 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97528-981 25 bp Feature: gene Location: 99629-99874 bp Feature: gene Location: 100398-100577 bp Feature: domain Description: HTH_ARSR Location: 100401-100563 bp Feature: domain Description: HTH_ARSR Location: 1 00401 -1 00563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), INT_Rci_Hp1_C (cd00796), RVT-Retrons