myRT

myRT report for GCA_002239715.1_ASM223971v1

Download annotations/find similar RTs

Seq: NIUD01000130.1 Klebsiella pneumoniae subsp. pneumoniae strain CREC003-1 NODE_56_length_12697_cov_37.6378_ID_111.ctg_1, whole genome shotgun sequence (12697 bp)
Overview 1 RT 1: 304-7685 bp Neighborhood of RT #1 [304, 7702] PRK09692 Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 304-1542 bp Feature: domain Description: PRK09692 Location: 310-1492 bp Feature: domain Description: PRK09692 Location: 31 0-1 492 bp Feature: gene Location: 1722-2177 bp Ori: OXU67174.1 Feature: domain Description: Integrase_1 Location: 1725-1959 bp Feature: domain Description: Integrase_1 Location: 1 725-1 959 bp Feature: gene Location: 2219-4300 bp Ori: OXU67175.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2630-3074 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2630-3074 bp Feature: gene Location: 4297-6891 bp Ori: OXU67176.1 Feature: domain Description: FimD Location: 4339-6880 bp Feature: domain Description: FimD Location: 4339-6880 bp Feature: gene Location: 6938-7702 bp Ori: OXU67177.1 Feature: domain Description: FimC Location: 6983-7685 bp Feature: domain Description: FimC Location: 6983-7685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NIUD01000091.1 Klebsiella pneumoniae subsp. pneumoniae strain CREC003-1 NODE_94_length_1892_cov_143.454_ID_187.ctg_1, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 59-1794 bp Neighborhood of RT #1 [59, 1794] RVT-GII Feature: gene Location: 59-1543 bp Ori: OXU72277.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: gene Location: 1543-1794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII