myRT

myRT report for GCA_002240945.1_ASM224094v1

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Seq: NIHF01000002.1 Escherichia coli strain ICBEcBL-III-02(2) ECBL-III-02-2_contig_2, whole genome shotgun sequence (166083 bp)
Overview 1 RT 1: 22522-28553 bp Neighborhood of RT #1 [22522, 28690] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22522-22662 bp Ori: OXV45521.1 Feature: domain Description: SfsB Location: 22531-22603 bp Feature: domain Description: SfsB Location: 22531 -22603 bp Feature: gene Location: 22659-23129 bp Feature: gene Location: 23476-26685 bp Ori: OXV45523.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24004-24493 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24004-24493 bp Feature: domain Description: nitrilase Location: 25999-26596 bp Feature: domain Description: nitrilase Location: 25999-26596 bp Feature: gene Location: 26980-27783 bp Ori: OXV45524.1 Feature: domain Description: AbiEi_3_N Location: 27013-27274 bp Feature: domain Description: AbiEi_3_N Location: 2701 3-27274 bp Feature: domain Description: AbiEi_3 Location: 27286-27742 bp Feature: domain Description: AbiEi_3 Location: 27286-27742 bp Feature: gene Location: 27770-28690 bp Ori: OXV45525.1 Feature: domain Description: AbiEii Location: 27812-28553 bp Feature: domain Description: AbiEii Location: 2781 2-28553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NIHF01000084.1 Escherichia coli strain ICBEcBL-III-02(2) ECBL-III-02-2_contig_84, whole genome shotgun sequence (2651 bp)
Overview 1 RT 1: 101-2651 bp Neighborhood of RT #1 [101, 2651] RVT-GII GIIM Feature: gene Location: 101-472 bp Feature: gene Location: 387-695 bp Feature: gene Location: 766-2289 bp Ori: OXV34273.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1771 bp Feature: domain Description: GIIM Note: maturase Location: 1846-2044 bp Feature: domain Description: GIIM Note: maturase Location: 1846-2 044 bp Feature: gene Location: 2518-2651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)