myRT

myRT report for GCA_002241235.1_ASM224123v1

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Seq: NDIE01000027.1 Vibrio sp. V09_P4A23P171 V09_P4A23P171_contig000024, whole genome shotgun sequence (35808 bp)
Overview 1 RT 1: 1-3025 bp Neighborhood of RT #1 [1, 3036] RVT-UG4 FimA PRK15274 Feature: gene Location: 1-758 bp Feature: gene Location: 755-1714 bp Ori: OXX37094.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1115-1547 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 1 5-1 547 bp Feature: gene Location: 1707-2147 bp Ori: OXX37128.1 Feature: domain Description: FimA Location: 1710-2145 bp Feature: domain Description: FimA Location: 1 71 0-21 45 bp Feature: gene Location: 2293-3036 bp Ori: OXX37095.1 Feature: domain Description: PRK15274 Location: 2350-3025 bp Feature: domain Description: PRK1 5274 Location: 2350-3025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimA (pfam16970), PRK15274 (putative periplasmic fimbrial chaperone protein SteC; Provisional)

Seq: NDIE01000002.1 Vibrio sp. V09_P4A23P171 V09_P4A23P171_contig000044, whole genome shotgun sequence (287353 bp)
Overview 1 RT 1: 195033-203134 bp Neighborhood of RT #1 [195033, 203259] MFS_NepI_like Uup RVT_N RVT-GII GIIM Tar TerC Feature: gene Location: 195033-196178 bp Ori: OXX39603.1 Feature: domain Description: MFS_NepI_like Location: 195048-196149 bp Feature: domain Description: MFS_NepI_like Location: 195048-196149 bp Feature: gene Location: 196180-197730 bp Ori: OXX39534.1 Feature: domain Description: Uup Location: 196183-197707 bp Feature: domain Description: Uup Location: 196183-197707 bp Feature: gene Location: 198760-200232 bp Ori: OXX39535.1 Feature: domain Description: RVT_N Location: 198808-199048 bp Feature: domain Description: RVT_N Location: 198808-199048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199096-199723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199096-19972 3 bp Feature: domain Description: GIIM Note: maturase Location: 199780-200008 bp Feature: domain Description: GIIM Note: maturase Location: 199780-2 00008 bp Feature: gene Location: 200661-202361 bp Ori: OXX39536.1 Feature: domain Description: Tar Location: 201039-202344 bp Feature: domain Description: Tar Location: 2 01039-2 02 344 bp Feature: gene Location: 202429-203259 bp Ori: OXX39537.1 Feature: domain Description: TerC Location: 202432-203134 bp Feature: domain Description: TerC Location: 2 02 432 -2 03134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_NepI_like (cd17324), Uup (COG0488), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tar (COG0840), TerC (pfam03741)